RNA–Protein interactions for RNA: ENST00000578904.1

CSNK1D-209, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 1,269 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-209ENST00000578904 NISCHQ9Y2I1 1504 aa32.76■■■□□ 2.83
CSNK1D-209ENST00000578904 CCDC180Q9P1Z9 1646 aa28.98■■■□□ 2.23
CSNK1D-209ENST00000578904 ABCC9O60706 1549 aa27.99■■■□□ 2.07
CSNK1D-209ENST00000578904 ZCCHC6Q5VYS8 1495 aaKnown RBP27.39■■□□□ 1.98
CSNK1D-209ENST00000578904 DCAF8L2P0C7V8 631 aa27.21■■□□□ 1.95
CSNK1D-209ENST00000578904 NACADO15069 1562 aa27.14■■□□□ 1.93
CSNK1D-209ENST00000578904 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
CSNK1D-209ENST00000578904 RB1CC1Q8TDY2 1594 aa27.09■■□□□ 1.93
CSNK1D-209ENST00000578904 MYO15BQ96JP2 1530 aa27.08■■□□□ 1.93
CSNK1D-209ENST00000578904 SCRIBQ14160 1630 aa26.5■■□□□ 1.83
CSNK1D-209ENST00000578904 UNC13AQ9UPW8 1703 aa26.47■■□□□ 1.83
CSNK1D-209ENST00000578904 DNAJC5BQ9UF47 199 aa26.41■■□□□ 1.82
CSNK1D-209ENST00000578904 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
CSNK1D-209ENST00000578904 PABPN1Q86U42 306 aaKnown RBP eCLIP26.19■■□□□ 1.78
CSNK1D-209ENST00000578904 SHROOM4Q9ULL8 1493 aa26.14■■□□□ 1.78
CSNK1D-209ENST00000578904 EIF4G1Q04637 1599 aaKnown RBP25.53■■□□□ 1.68
CSNK1D-209ENST00000578904 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
CSNK1D-209ENST00000578904 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
CSNK1D-209ENST00000578904 SMARCA4P51532 1647 aa25.36■■□□□ 1.65
CSNK1D-209ENST00000578904 CC2D2AQ9P2K1 1620 aa25.34■■□□□ 1.65
CSNK1D-209ENST00000578904 MROH2BQ7Z745 1585 aa25.26■■□□□ 1.63
CSNK1D-209ENST00000578904 SMARCA2P51531 1590 aa25.12■■□□□ 1.61
CSNK1D-209ENST00000578904 ATAD2BQ9ULI0 1458 aa25.1■■□□□ 1.61
CSNK1D-209ENST00000578904 RSF1Q96T23 1441 aaPredicted RBP25.09■■□□□ 1.61
CSNK1D-209ENST00000578904 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
CSNK1D-209ENST00000578904 WIZO95785 1651 aa25.01■■□□□ 1.59
CSNK1D-209ENST00000578904 NCAPD3P42695 1498 aa25.01■■□□□ 1.59
CSNK1D-209ENST00000578904 HMGXB3Q12766 1538 aa24.96■■□□□ 1.59
CSNK1D-209ENST00000578904 BAZ1BQ9UIG0 1483 aaKnown RBP24.95■■□□□ 1.58
CSNK1D-209ENST00000578904 TOP2AP11388 1531 aaKnown RBP24.79■■□□□ 1.56
CSNK1D-209ENST00000578904 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
CSNK1D-209ENST00000578904 DNAJC5Q9H3Z4 198 aa24.73■■□□□ 1.55
CSNK1D-209ENST00000578904 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.51
CSNK1D-209ENST00000578904 LAMC3Q9Y6N6 1575 aa24.33■■□□□ 1.48
CSNK1D-209ENST00000578904 NESP48681 1621 aa24.32■■□□□ 1.48
CSNK1D-209ENST00000578904 CADPSQ9ULU8 1353 aa24.31■■□□□ 1.48
CSNK1D-209ENST00000578904 CFTRP13569 1480 aa24.26■■□□□ 1.47
CSNK1D-209ENST00000578904 PDS5BQ9NTI5 1447 aa24.15■■□□□ 1.46
CSNK1D-209ENST00000578904 PRDM2Q13029 1718 aa24.14■■□□□ 1.45
CSNK1D-209ENST00000578904 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
CSNK1D-209ENST00000578904 KIF21AQ7Z4S6 1674 aa24.07■■□□□ 1.44
CSNK1D-209ENST00000578904 FANCD2Q9BXW9 1451 aa24.07■■□□□ 1.44
CSNK1D-209ENST00000578904 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
CSNK1D-209ENST00000578904 CUX2O14529 1486 aa23.92■■□□□ 1.42
CSNK1D-209ENST00000578904 THOC2Q8NI27 1593 aaKnown RBP23.9■■□□□ 1.42
CSNK1D-209ENST00000578904 MRC2Q9UBG0 1479 aa23.89■■□□□ 1.42
CSNK1D-209ENST00000578904 WDR62O43379 1518 aa23.79■■□□□ 1.4
CSNK1D-209ENST00000578904 URB2Q14146 1524 aaKnown RBP23.79■■□□□ 1.4
CSNK1D-209ENST00000578904 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
CSNK1D-209ENST00000578904 ABCC8Q09428 1581 aa23.73■■□□□ 1.39
CSNK1D-209ENST00000578904 TOPBP1Q92547 1522 aa23.72■■□□□ 1.39
CSNK1D-209ENST00000578904 CUX1P39880 1505 aa23.69■■□□□ 1.38
CSNK1D-209ENST00000578904 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.38
CSNK1D-209ENST00000578904 SYNJ1O43426 1573 aa23.61■■□□□ 1.37
CSNK1D-209ENST00000578904 TOP2BQ02880 1626 aa23.59■■□□□ 1.37
CSNK1D-209ENST00000578904 BIVM-ERCC5R4GMW8 1640 aa23.58■■□□□ 1.36
CSNK1D-209ENST00000578904 POLA1P09884 1462 aaPredicted RBP23.55■■□□□ 1.36
CSNK1D-209ENST00000578904 FGD5Q6ZNL6 1462 aa23.55■■□□□ 1.36
CSNK1D-209ENST00000578904 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
CSNK1D-209ENST00000578904 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
CSNK1D-209ENST00000578904 SOGA1O94964 1423 aa23.43■■□□□ 1.34
CSNK1D-209ENST00000578904 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
CSNK1D-209ENST00000578904 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
CSNK1D-209ENST00000578904 TRIM41Q8WV44 630 aa23.38■■□□□ 1.33
CSNK1D-209ENST00000578904 WDR97A6NE52 1622 aa23.34■■□□□ 1.33
CSNK1D-209ENST00000578904 ZNF608Q9ULD9 1512 aaPredicted RBP23.33■■□□□ 1.33
CSNK1D-209ENST00000578904 ABCA10Q8WWZ4 1543 aa23.33■■□□□ 1.32
CSNK1D-209ENST00000578904 EIF4G3O43432 1585 aaKnown RBP23.3■■□□□ 1.32
CSNK1D-209ENST00000578904 TDRD9Q8NDG6 1382 aaKnown RBP23.26■■□□□ 1.31
CSNK1D-209ENST00000578904 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.312e-9■■■■■ 41.5
CSNK1D-209ENST00000578904 ABCA5Q8WWZ7 1642 aa23.22■■□□□ 1.31
CSNK1D-209ENST00000578904 GAPVD1Q14C86 1478 aa23.18■■□□□ 1.3
CSNK1D-209ENST00000578904 PBRM1Q86U86 1689 aa23.15■■□□□ 1.3
CSNK1D-209ENST00000578904 KIF27Q86VH2 1401 aa23.15■■□□□ 1.3
CSNK1D-209ENST00000578904 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
CSNK1D-209ENST00000578904 SNAPC4Q5SXM2 1469 aa23.08■■□□□ 1.29
CSNK1D-209ENST00000578904 ERICH3Q5RHP9 1530 aa23.07■■□□□ 1.28
CSNK1D-209ENST00000578904 MAGI1Q96QZ7 1491 aaPredicted RBP23.05■■□□□ 1.28
CSNK1D-209ENST00000578904 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
CSNK1D-209ENST00000578904 ADAMTS12P58397 1594 aa22.99■■□□□ 1.27
CSNK1D-209ENST00000578904 IGF1RP08069 1367 aa22.96■■□□□ 1.27
CSNK1D-209ENST00000578904 EEA1Q15075 1411 aa22.96■■□□□ 1.27
CSNK1D-209ENST00000578904 CUL7Q14999 1698 aa22.95■■□□□ 1.26
CSNK1D-209ENST00000578904 SYNJ2O15056 1496 aa22.94■■□□□ 1.26
CSNK1D-209ENST00000578904 FHAD1B1AJZ9 1412 aa22.93■■□□□ 1.26
CSNK1D-209ENST00000578904 CHD1O14646 1710 aa22.92■■□□□ 1.26
CSNK1D-209ENST00000578904 FBLN2P98095 1184 aa22.91■■□□□ 1.26
CSNK1D-209ENST00000578904 CHMP7Q8WUX9 453 aaPredicted RBP22.89■■□□□ 1.25
CSNK1D-209ENST00000578904 FAM9AQ8IZU1 332 aaPredicted RBP22.88■■□□□ 1.25
CSNK1D-209ENST00000578904 CARMIL1Q5VZK9 1371 aa22.86■■□□□ 1.25
CSNK1D-209ENST00000578904 GRIN2AQ12879 1464 aa22.84■■□□□ 1.25
CSNK1D-209ENST00000578904 CSRNP3Q8WYN3 585 aa22.83■■□□□ 1.25
CSNK1D-209ENST00000578904 OSCARQ8IYS5 282 aa22.82■■□□□ 1.24
CSNK1D-209ENST00000578904 RAPGEF2Q9Y4G8 1499 aa22.79■■□□□ 1.24
CSNK1D-209ENST00000578904 PRXQ9BXM0 1461 aa22.78■■□□□ 1.24
CSNK1D-209ENST00000578904 CEP170Q5SW79 1584 aa22.72■■□□□ 1.23
CSNK1D-209ENST00000578904 NUP160Q12769 1436 aa22.71■■□□□ 1.23
CSNK1D-209ENST00000578904 KIF21BO75037 1637 aa22.7■■□□□ 1.22
CSNK1D-209ENST00000578904 CLASP1Q7Z460 1538 aa22.67■■□□□ 1.22
CSNK1D-209ENST00000578904 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms