RNA–Protein interactions for RNA: ENST00000581108.5

CSNK1D-216, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 607 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-216ENST00000581108 NISCHQ9Y2I1 1504 aa52.76■■■■■ 6.04
CSNK1D-216ENST00000581108 CCDC180Q9P1Z9 1646 aa47.14■■■■■ 5.14
CSNK1D-216ENST00000581108 ABCC9O60706 1549 aa46.83■■■■■ 5.09
CSNK1D-216ENST00000581108 RB1CC1Q8TDY2 1594 aa44.69■■■■■ 4.75
CSNK1D-216ENST00000581108 NACADO15069 1562 aa44.48■■■■■ 4.71
CSNK1D-216ENST00000581108 DCAF8L2P0C7V8 631 aa44.46■■■■■ 4.71
CSNK1D-216ENST00000581108 MYO15BQ96JP2 1530 aa43.96■■■■■ 4.63
CSNK1D-216ENST00000581108 ZCCHC6Q5VYS8 1495 aaKnown RBP43.77■■■■■ 4.6
CSNK1D-216ENST00000581108 UNC13AQ9UPW8 1703 aa43.76■■■■■ 4.6
CSNK1D-216ENST00000581108 PABPN1Q86U42 306 aaKnown RBP eCLIP43.7■■■■■ 4.59
CSNK1D-216ENST00000581108 DNAJC5BQ9UF47 199 aa43.64■■■■■ 4.58
CSNK1D-216ENST00000581108 DCAF1Q9Y4B6 1507 aa43.56■■■■■ 4.56
CSNK1D-216ENST00000581108 BICRAQ9NZM4 1560 aa43.41■■■■■ 4.54
CSNK1D-216ENST00000581108 SCRIBQ14160 1630 aa43.02■■■■■ 4.48
CSNK1D-216ENST00000581108 SHROOM4Q9ULL8 1493 aa42.76■■■■■ 4.44
CSNK1D-216ENST00000581108 CC2D2AQ9P2K1 1620 aa42.31■■■■■ 4.36
CSNK1D-216ENST00000581108 EIF4G1Q04637 1599 aaKnown RBP42.3■■■■■ 4.36
CSNK1D-216ENST00000581108 CECR2Q9BXF3 1484 aa42.11■■■■■ 4.33
CSNK1D-216ENST00000581108 NCAPD3P42695 1498 aa41.07■■■■■ 4.16
CSNK1D-216ENST00000581108 SMARCA4P51532 1647 aa41.07■■■■■ 4.16
CSNK1D-216ENST00000581108 ATAD2BQ9ULI0 1458 aa41.01■■■■■ 4.16
CSNK1D-216ENST00000581108 BAZ1AQ9NRL2 1556 aaPredicted RBP40.91■■■■■ 4.14
CSNK1D-216ENST00000581108 SMARCA2P51531 1590 aa40.89■■■■■ 4.14
CSNK1D-216ENST00000581108 HMGXB3Q12766 1538 aa40.77■■■■■ 4.12
CSNK1D-216ENST00000581108 MROH2BQ7Z745 1585 aa40.68■■■■■ 4.1
CSNK1D-216ENST00000581108 PEG3Q9GZU2 1588 aa40.64■■■■■ 4.1
CSNK1D-216ENST00000581108 BAZ1BQ9UIG0 1483 aaKnown RBP40.63■■■■■ 4.09
CSNK1D-216ENST00000581108 ERCC6Q03468 1493 aa40.37■■■■■ 4.05
CSNK1D-216ENST00000581108 NESP48681 1621 aa40.35■■■■■ 4.05
CSNK1D-216ENST00000581108 WIZO95785 1651 aa40.23■■■■■ 4.03
CSNK1D-216ENST00000581108 CUX2O14529 1486 aa40.13■■■■■ 4.02
CSNK1D-216ENST00000581108 LAMC3Q9Y6N6 1575 aa40.08■■■■■ 4.01
CSNK1D-216ENST00000581108 RSF1Q96T23 1441 aaPredicted RBP39.97■■■■□ 3.99
CSNK1D-216ENST00000581108 CADPSQ9ULU8 1353 aa39.85■■■■□ 3.97
CSNK1D-216ENST00000581108 KIF21AQ7Z4S6 1674 aa39.84■■■■□ 3.97
CSNK1D-216ENST00000581108 PDS5BQ9NTI5 1447 aa39.83■■■■□ 3.97
CSNK1D-216ENST00000581108 THOC2Q8NI27 1593 aaKnown RBP39.81■■■■□ 3.96
CSNK1D-216ENST00000581108 DNAJC5Q9H3Z4 198 aa39.75■■■■□ 3.95
CSNK1D-216ENST00000581108 TOP2AP11388 1531 aaKnown RBP39.69■■■■□ 3.94
CSNK1D-216ENST00000581108 CFTRP13569 1480 aa39.47■■■■□ 3.91
CSNK1D-216ENST00000581108 MRC2Q9UBG0 1479 aa39.46■■■■□ 3.91
CSNK1D-216ENST00000581108 FANCD2Q9BXW9 1451 aa39.4■■■■□ 3.9
CSNK1D-216ENST00000581108 CEP164Q9UPV0 1460 aa39.39■■■■□ 3.9
CSNK1D-216ENST00000581108 WDR62O43379 1518 aa39.35■■■■□ 3.89
CSNK1D-216ENST00000581108 CCDC88BA6NC98 1476 aa39.28■■■■□ 3.88
CSNK1D-216ENST00000581108 PRDM2Q13029 1718 aa39.12■■■■□ 3.85
CSNK1D-216ENST00000581108 URB2Q14146 1524 aaKnown RBP39.06■■■■□ 3.84
CSNK1D-216ENST00000581108 TOPBP1Q92547 1522 aa38.7■■■■□ 3.79
CSNK1D-216ENST00000581108 ABCC8Q09428 1581 aa38.61■■■■□ 3.77
CSNK1D-216ENST00000581108 IFT140Q96RY7 1462 aa38.59■■■■□ 3.77
CSNK1D-216ENST00000581108 DNMBPQ6XZF7 1577 aa38.57■■■■□ 3.77
CSNK1D-216ENST00000581108 SUPT5HO00267 1087 aaKnown RBP38.56■■■■□ 3.76
CSNK1D-216ENST00000581108 ZNF608Q9ULD9 1512 aaPredicted RBP38.53■■■■□ 3.76
CSNK1D-216ENST00000581108 OSCARQ8IYS5 282 aa38.44■■■■□ 3.74
CSNK1D-216ENST00000581108 TARBP1Q13395 1621 aaKnown RBP38.34■■■■□ 3.73
CSNK1D-216ENST00000581108 POLA1P09884 1462 aaPredicted RBP38.33■■■■□ 3.73
CSNK1D-216ENST00000581108 EIF4G3O43432 1585 aaKnown RBP38.31■■■■□ 3.72
CSNK1D-216ENST00000581108 AQRO60306 1485 aaKnown RBP eCLIP38.24■■■■□ 3.712e-9■■■■■ 52.3
CSNK1D-216ENST00000581108 RAD54L2Q9Y4B4 1467 aa38.22■■■■□ 3.71
CSNK1D-216ENST00000581108 TRIM41Q8WV44 630 aa38.19■■■■□ 3.7
CSNK1D-216ENST00000581108 CUX1P39880 1505 aa38.18■■■■□ 3.7
CSNK1D-216ENST00000581108 SOGA1O94964 1423 aa38.18■■■■□ 3.7
CSNK1D-216ENST00000581108 FGD5Q6ZNL6 1462 aa38.15■■■■□ 3.7
CSNK1D-216ENST00000581108 TDRD9Q8NDG6 1382 aaKnown RBP38.07■■■■□ 3.69
CSNK1D-216ENST00000581108 CHD1O14646 1710 aa37.99■■■■□ 3.67
CSNK1D-216ENST00000581108 FBLN2P98095 1184 aa37.94■■■■□ 3.66
CSNK1D-216ENST00000581108 WDR97A6NE52 1622 aa37.9■■■■□ 3.66
CSNK1D-216ENST00000581108 RIMBP3CA6NJZ7 1639 aa37.88■■■■□ 3.65
CSNK1D-216ENST00000581108 RIMBP3BA6NNM3 1639 aa37.88■■■■□ 3.65
CSNK1D-216ENST00000581108 RIMBP3Q9UFD9 1639 aa37.88■■■■□ 3.65
CSNK1D-216ENST00000581108 SNAPC4Q5SXM2 1469 aa37.83■■■■□ 3.65
CSNK1D-216ENST00000581108 ARHGEF11O15085 1522 aa37.78■■■■□ 3.64
CSNK1D-216ENST00000581108 GRIN2BQ13224 1484 aa37.77■■■■□ 3.64
CSNK1D-216ENST00000581108 MAGI1Q96QZ7 1491 aaPredicted RBP37.72■■■■□ 3.63
CSNK1D-216ENST00000581108 ABCA10Q8WWZ4 1543 aa37.71■■■■□ 3.63
CSNK1D-216ENST00000581108 GAPVD1Q14C86 1478 aa37.71■■■■□ 3.63
CSNK1D-216ENST00000581108 CHMP7Q8WUX9 453 aaPredicted RBP37.7■■■■□ 3.63
CSNK1D-216ENST00000581108 WRNQ14191 1432 aaPredicted RBP eCLIP37.69■■■■□ 3.62
CSNK1D-216ENST00000581108 PBRM1Q86U86 1689 aa37.68■■■■□ 3.62
CSNK1D-216ENST00000581108 TOP2BQ02880 1626 aa37.67■■■■□ 3.62
CSNK1D-216ENST00000581108 BIVM-ERCC5R4GMW8 1640 aa37.66■■■■□ 3.62
CSNK1D-216ENST00000581108 SYNJ1O43426 1573 aa37.65■■■■□ 3.62
CSNK1D-216ENST00000581108 ABCA5Q8WWZ7 1642 aa37.63■■■■□ 3.61
CSNK1D-216ENST00000581108 SYNJ2O15056 1496 aa37.6■■■■□ 3.61
CSNK1D-216ENST00000581108 CYB5RLQ6IPT4 315 aa37.54■■■■□ 3.6
CSNK1D-216ENST00000581108 CLASP1Q7Z460 1538 aa37.52■■■■□ 3.6
CSNK1D-216ENST00000581108 ARAP1Q96P48 1450 aa37.44■■■■□ 3.58
CSNK1D-216ENST00000581108 ADAMTS12P58397 1594 aa37.31■■■■□ 3.56
CSNK1D-216ENST00000581108 GRIN2AQ12879 1464 aa37.29■■■■□ 3.56
CSNK1D-216ENST00000581108 ERICH3Q5RHP9 1530 aa37.25■■■■□ 3.55
CSNK1D-216ENST00000581108 FHAD1B1AJZ9 1412 aa37.23■■■■□ 3.55
CSNK1D-216ENST00000581108 CEP170Q5SW79 1584 aa37.16■■■■□ 3.54
CSNK1D-216ENST00000581108 NUP160Q12769 1436 aa37.14■■■■□ 3.54
CSNK1D-216ENST00000581108 ERCC6L2Q5T890 1561 aa37.01■■■■□ 3.52
CSNK1D-216ENST00000581108 TRHP20396 242 aaPredicted RBP37■■■■□ 3.51
CSNK1D-216ENST00000581108 SHROOM2Q13796 1616 aa36.95■■■■□ 3.51
CSNK1D-216ENST00000581108 KIF27Q86VH2 1401 aa36.93■■■■□ 3.5
CSNK1D-216ENST00000581108 IGF1RP08069 1367 aa36.91■■■■□ 3.5
CSNK1D-216ENST00000581108 JPH4Q96JJ6 628 aa36.83■■■■□ 3.49
CSNK1D-216ENST00000581108 PRG4Q92954 1404 aaPredicted RBP36.79■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms