RNA–Protein interactions for RNA: ENST00000556897.5

HNRNPC-227, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HNRNPC, Length 1,252 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-227ENST00000556897 NISCHQ9Y2I1 1504 aa22.93■■□□□ 1.26
HNRNPC-227ENST00000556897 ABCC9O60706 1549 aa20.91■□□□□ 0.94
HNRNPC-227ENST00000556897 CCDC180Q9P1Z9 1646 aa20.63■□□□□ 0.89
HNRNPC-227ENST00000556897 DNAJC5BQ9UF47 199 aa19.83■□□□□ 0.77
HNRNPC-227ENST00000556897 RB1CC1Q8TDY2 1594 aa19.76■□□□□ 0.75
HNRNPC-227ENST00000556897 NACADO15069 1562 aa19.58■□□□□ 0.73
HNRNPC-227ENST00000556897 DCAF8L2P0C7V8 631 aa19.51■□□□□ 0.71
HNRNPC-227ENST00000556897 PABPN1Q86U42 306 aaKnown RBP eCLIP19.46■□□□□ 0.71
HNRNPC-227ENST00000556897 UNC13AQ9UPW8 1703 aa19.31■□□□□ 0.68
HNRNPC-227ENST00000556897 MYO15BQ96JP2 1530 aa19.22■□□□□ 0.67
HNRNPC-227ENST00000556897 BICRAQ9NZM4 1560 aa19.21■□□□□ 0.67
HNRNPC-227ENST00000556897 ZCCHC6Q5VYS8 1495 aaKnown RBP18.96■□□□□ 0.63
HNRNPC-227ENST00000556897 DCAF1Q9Y4B6 1507 aa18.9■□□□□ 0.62
HNRNPC-227ENST00000556897 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
HNRNPC-227ENST00000556897 CC2D2AQ9P2K1 1620 aa18.85■□□□□ 0.61
HNRNPC-227ENST00000556897 CECR2Q9BXF3 1484 aa18.85■□□□□ 0.61
HNRNPC-227ENST00000556897 SCRIBQ14160 1630 aa18.84■□□□□ 0.61
HNRNPC-227ENST00000556897 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
HNRNPC-227ENST00000556897 DNAJC5Q9H3Z4 198 aa18.34■□□□□ 0.53
HNRNPC-227ENST00000556897 AEBP2Q6ZN18 517 aaPredicted RBP18.33■□□□□ 0.52
HNRNPC-227ENST00000556897 NCAPD3P42695 1498 aa18.09■□□□□ 0.49
HNRNPC-227ENST00000556897 CUX2O14529 1486 aa18.07■□□□□ 0.48
HNRNPC-227ENST00000556897 ERCC6Q03468 1493 aa18.07■□□□□ 0.48
HNRNPC-227ENST00000556897 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
HNRNPC-227ENST00000556897 SMARCA2P51531 1590 aa17.93■□□□□ 0.46
HNRNPC-227ENST00000556897 SMARCA4P51532 1647 aa17.92■□□□□ 0.46
HNRNPC-227ENST00000556897 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
HNRNPC-227ENST00000556897 HMGXB3Q12766 1538 aa17.92■□□□□ 0.46
HNRNPC-227ENST00000556897 NESP48681 1621 aa17.9■□□□□ 0.46
HNRNPC-227ENST00000556897 BAZ1BQ9UIG0 1483 aaKnown RBP17.83■□□□□ 0.45
HNRNPC-227ENST00000556897 BAZ1AQ9NRL2 1556 aaPredicted RBP17.81■□□□□ 0.44
HNRNPC-227ENST00000556897 PEG3Q9GZU2 1588 aa17.74■□□□□ 0.43
HNRNPC-227ENST00000556897 THOC2Q8NI27 1593 aaKnown RBP17.73■□□□□ 0.43
HNRNPC-227ENST00000556897 LAMC3Q9Y6N6 1575 aa17.7■□□□□ 0.42
HNRNPC-227ENST00000556897 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
HNRNPC-227ENST00000556897 PDS5BQ9NTI5 1447 aa17.63■□□□□ 0.41
HNRNPC-227ENST00000556897 KIF21AQ7Z4S6 1674 aa17.62■□□□□ 0.41
HNRNPC-227ENST00000556897 CADPSQ9ULU8 1353 aa17.54■□□□□ 0.4
HNRNPC-227ENST00000556897 MRC2Q9UBG0 1479 aa17.49■□□□□ 0.39
HNRNPC-227ENST00000556897 TRIM41Q8WV44 630 aa17.47■□□□□ 0.39
HNRNPC-227ENST00000556897 WDR62O43379 1518 aa17.45■□□□□ 0.38
HNRNPC-227ENST00000556897 WIZO95785 1651 aa17.45■□□□□ 0.38
HNRNPC-227ENST00000556897 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
HNRNPC-227ENST00000556897 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
HNRNPC-227ENST00000556897 CFTRP13569 1480 aa17.3■□□□□ 0.36
HNRNPC-227ENST00000556897 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
HNRNPC-227ENST00000556897 RSF1Q96T23 1441 aaPredicted RBP17.24■□□□□ 0.35
HNRNPC-227ENST00000556897 URB2Q14146 1524 aaKnown RBP17.21■□□□□ 0.35
HNRNPC-227ENST00000556897 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.34
HNRNPC-227ENST00000556897 ZNF608Q9ULD9 1512 aaPredicted RBP17.06■□□□□ 0.32
HNRNPC-227ENST00000556897 PRDM2Q13029 1718 aa17.05■□□□□ 0.32
HNRNPC-227ENST00000556897 IFT140Q96RY7 1462 aa17.04■□□□□ 0.32
HNRNPC-227ENST00000556897 CCDC88BA6NC98 1476 aa17.03■□□□□ 0.32
HNRNPC-227ENST00000556897 RIMBP3CA6NJZ7 1639 aa17.02■□□□□ 0.31
HNRNPC-227ENST00000556897 RIMBP3BA6NNM3 1639 aa17.02■□□□□ 0.31
HNRNPC-227ENST00000556897 RIMBP3Q9UFD9 1639 aa17.02■□□□□ 0.31
HNRNPC-227ENST00000556897 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
HNRNPC-227ENST00000556897 ARHGEF11O15085 1522 aa16.96■□□□□ 0.3
HNRNPC-227ENST00000556897 EIF4G3O43432 1585 aaKnown RBP16.92■□□□□ 0.3
HNRNPC-227ENST00000556897 ABCC8Q09428 1581 aa16.91■□□□□ 0.3
HNRNPC-227ENST00000556897 DNMBPQ6XZF7 1577 aa16.89■□□□□ 0.3
HNRNPC-227ENST00000556897 CYB5RLQ6IPT4 315 aa16.88■□□□□ 0.29
HNRNPC-227ENST00000556897 AQRO60306 1485 aaKnown RBP eCLIP16.87■□□□□ 0.292e-7■■■■□ 23.4
HNRNPC-227ENST00000556897 TARBP1Q13395 1621 aaKnown RBP16.84■□□□□ 0.29
HNRNPC-227ENST00000556897 CHD1O14646 1710 aa16.83■□□□□ 0.28
HNRNPC-227ENST00000556897 FBLN2P98095 1184 aa16.83■□□□□ 0.28
HNRNPC-227ENST00000556897 POLA1P09884 1462 aaPredicted RBP16.8■□□□□ 0.28
HNRNPC-227ENST00000556897 ARAP1Q96P48 1450 aa16.78■□□□□ 0.28
HNRNPC-227ENST00000556897 RAD54L2Q9Y4B4 1467 aa16.76■□□□□ 0.27
HNRNPC-227ENST00000556897 TRHP20396 242 aaPredicted RBP16.76■□□□□ 0.27
HNRNPC-227ENST00000556897 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
HNRNPC-227ENST00000556897 SOGA1O94964 1423 aa16.73■□□□□ 0.27
HNRNPC-227ENST00000556897 SNAPC4Q5SXM2 1469 aa16.68■□□□□ 0.26
HNRNPC-227ENST00000556897 FGD5Q6ZNL6 1462 aa16.67■□□□□ 0.26
HNRNPC-227ENST00000556897 CHMP7Q8WUX9 453 aaPredicted RBP16.65■□□□□ 0.26
HNRNPC-227ENST00000556897 CLASP1Q7Z460 1538 aa16.64■□□□□ 0.25
HNRNPC-227ENST00000556897 CUX1P39880 1505 aa16.62■□□□□ 0.25
HNRNPC-227ENST00000556897 WDR97A6NE52 1622 aa16.62■□□□□ 0.25
HNRNPC-227ENST00000556897 MAGI1Q96QZ7 1491 aaPredicted RBP16.61■□□□□ 0.25
HNRNPC-227ENST00000556897 SYNJ1O43426 1573 aa16.6■□□□□ 0.25
HNRNPC-227ENST00000556897 GRIN2BQ13224 1484 aa16.6■□□□□ 0.25
HNRNPC-227ENST00000556897 SYNJ2O15056 1496 aa16.57■□□□□ 0.24
HNRNPC-227ENST00000556897 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
HNRNPC-227ENST00000556897 PBRM1Q86U86 1689 aa16.49■□□□□ 0.23
HNRNPC-227ENST00000556897 ABCA10Q8WWZ4 1543 aa16.46■□□□□ 0.23
HNRNPC-227ENST00000556897 ABCA5Q8WWZ7 1642 aa16.45■□□□□ 0.22
HNRNPC-227ENST00000556897 GRIN2AQ12879 1464 aa16.39■□□□□ 0.21
HNRNPC-227ENST00000556897 ERCC6L2Q5T890 1561 aa16.38■□□□□ 0.21
HNRNPC-227ENST00000556897 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
HNRNPC-227ENST00000556897 SUPT5HO00267 1087 aaKnown RBP16.36■□□□□ 0.21
HNRNPC-227ENST00000556897 ADAMTS12P58397 1594 aa16.34■□□□□ 0.21
HNRNPC-227ENST00000556897 CEP170Q5SW79 1584 aa16.34■□□□□ 0.21
HNRNPC-227ENST00000556897 NUP160Q12769 1436 aa16.34■□□□□ 0.21
HNRNPC-227ENST00000556897 FHAD1B1AJZ9 1412 aa16.29■□□□□ 0.2
HNRNPC-227ENST00000556897 TOP2BQ02880 1626 aa16.28■□□□□ 0.2
HNRNPC-227ENST00000556897 SHROOM2Q13796 1616 aa16.27■□□□□ 0.2
HNRNPC-227ENST00000556897 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.19
HNRNPC-227ENST00000556897 ERICH3Q5RHP9 1530 aa16.24■□□□□ 0.19
HNRNPC-227ENST00000556897 PRG4Q92954 1404 aaPredicted RBP16.21■□□□□ 0.19
HNRNPC-227ENST00000556897 JPH4Q96JJ6 628 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms