RNA–Protein interactions for RNA: ENST00000557442.5

HNRNPC-232, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 2

Gene HNRNPC, Length 1,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-232ENST00000557442 NISCHQ9Y2I1 1504 aa25.66■■□□□ 1.7
HNRNPC-232ENST00000557442 CCDC180Q9P1Z9 1646 aa22.91■■□□□ 1.26
HNRNPC-232ENST00000557442 ABCC9O60706 1549 aa22.2■■□□□ 1.15
HNRNPC-232ENST00000557442 RB1CC1Q8TDY2 1594 aa21.45■■□□□ 1.02
HNRNPC-232ENST00000557442 NACADO15069 1562 aa21.42■■□□□ 1.02
HNRNPC-232ENST00000557442 ZCCHC6Q5VYS8 1495 aaKnown RBP21.42■■□□□ 1.02
HNRNPC-232ENST00000557442 DCAF8L2P0C7V8 631 aa21.32■■□□□ 1
HNRNPC-232ENST00000557442 MYO15BQ96JP2 1530 aa21.28■■□□□ 1
HNRNPC-232ENST00000557442 DCAF1Q9Y4B6 1507 aa21.23■□□□□ 0.99
HNRNPC-232ENST00000557442 AEBP2Q6ZN18 517 aaPredicted RBP21.17■□□□□ 0.98
HNRNPC-232ENST00000557442 UNC13AQ9UPW8 1703 aa21.13■□□□□ 0.97
HNRNPC-232ENST00000557442 SCRIBQ14160 1630 aa20.88■□□□□ 0.93
HNRNPC-232ENST00000557442 BICRAQ9NZM4 1560 aa20.79■□□□□ 0.92
HNRNPC-232ENST00000557442 PABPN1Q86U42 306 aaKnown RBP eCLIP20.68■□□□□ 0.9
HNRNPC-232ENST00000557442 SHROOM4Q9ULL8 1493 aa20.55■□□□□ 0.88
HNRNPC-232ENST00000557442 EIF4G1Q04637 1599 aaKnown RBP20.24■□□□□ 0.83
HNRNPC-232ENST00000557442 DNAJC5BQ9UF47 199 aa20.18■□□□□ 0.82
HNRNPC-232ENST00000557442 CC2D2AQ9P2K1 1620 aa20.15■□□□□ 0.82
HNRNPC-232ENST00000557442 SMARCA4P51532 1647 aa19.97■□□□□ 0.79
HNRNPC-232ENST00000557442 CECR2Q9BXF3 1484 aa19.95■□□□□ 0.78
HNRNPC-232ENST00000557442 BAZ1AQ9NRL2 1556 aaPredicted RBP19.92■□□□□ 0.78
HNRNPC-232ENST00000557442 MROH2BQ7Z745 1585 aa19.79■□□□□ 0.76
HNRNPC-232ENST00000557442 SMARCA2P51531 1590 aa19.78■□□□□ 0.76
HNRNPC-232ENST00000557442 ATAD2BQ9ULI0 1458 aa19.74■□□□□ 0.75
HNRNPC-232ENST00000557442 PEG3Q9GZU2 1588 aa19.73■□□□□ 0.75
HNRNPC-232ENST00000557442 CHIC1Q5VXU3 224 aa19.71■□□□□ 0.75
HNRNPC-232ENST00000557442 HMGXB3Q12766 1538 aa19.69■□□□□ 0.74
HNRNPC-232ENST00000557442 NCAPD3P42695 1498 aa19.69■□□□□ 0.74
HNRNPC-232ENST00000557442 WIZO95785 1651 aa19.65■□□□□ 0.74
HNRNPC-232ENST00000557442 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
HNRNPC-232ENST00000557442 RSF1Q96T23 1441 aaPredicted RBP19.54■□□□□ 0.72
HNRNPC-232ENST00000557442 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
HNRNPC-232ENST00000557442 LAMC3Q9Y6N6 1575 aa19.26■□□□□ 0.67
HNRNPC-232ENST00000557442 NESP48681 1621 aa19.25■□□□□ 0.67
HNRNPC-232ENST00000557442 PRDM2Q13029 1718 aa19.18■□□□□ 0.66
HNRNPC-232ENST00000557442 KIF21AQ7Z4S6 1674 aa19.17■□□□□ 0.66
HNRNPC-232ENST00000557442 ERCC6Q03468 1493 aa19.15■□□□□ 0.66
HNRNPC-232ENST00000557442 CCDC88BA6NC98 1476 aa19.11■□□□□ 0.65
HNRNPC-232ENST00000557442 CADPSQ9ULU8 1353 aa19.1■□□□□ 0.65
HNRNPC-232ENST00000557442 SUPT5HO00267 1087 aaKnown RBP19.08■□□□□ 0.65
HNRNPC-232ENST00000557442 CFTRP13569 1480 aa19.04■□□□□ 0.64
HNRNPC-232ENST00000557442 PDS5BQ9NTI5 1447 aa19.04■□□□□ 0.64
HNRNPC-232ENST00000557442 THOC2Q8NI27 1593 aaKnown RBP19.02■□□□□ 0.64
HNRNPC-232ENST00000557442 FANCD2Q9BXW9 1451 aa18.95■□□□□ 0.62
HNRNPC-232ENST00000557442 CEP164Q9UPV0 1460 aa18.94■□□□□ 0.62
HNRNPC-232ENST00000557442 CUX2O14529 1486 aa18.9■□□□□ 0.62
HNRNPC-232ENST00000557442 MRC2Q9UBG0 1479 aa18.88■□□□□ 0.61
HNRNPC-232ENST00000557442 WDR62O43379 1518 aa18.85■□□□□ 0.61
HNRNPC-232ENST00000557442 URB2Q14146 1524 aaKnown RBP18.76■□□□□ 0.59
HNRNPC-232ENST00000557442 DNMBPQ6XZF7 1577 aa18.7■□□□□ 0.58
HNRNPC-232ENST00000557442 TOPBP1Q92547 1522 aa18.67■□□□□ 0.58
HNRNPC-232ENST00000557442 ABCC8Q09428 1581 aa18.65■□□□□ 0.58
HNRNPC-232ENST00000557442 CUX1P39880 1505 aa18.57■□□□□ 0.56
HNRNPC-232ENST00000557442 BIVM-ERCC5R4GMW8 1640 aa18.51■□□□□ 0.55
HNRNPC-232ENST00000557442 POLA1P09884 1462 aaPredicted RBP18.51■□□□□ 0.55
HNRNPC-232ENST00000557442 IFT140Q96RY7 1462 aa18.51■□□□□ 0.55
HNRNPC-232ENST00000557442 TARBP1Q13395 1621 aaKnown RBP18.51■□□□□ 0.55
HNRNPC-232ENST00000557442 FGD5Q6ZNL6 1462 aa18.49■□□□□ 0.55
HNRNPC-232ENST00000557442 SYNJ1O43426 1573 aa18.48■□□□□ 0.55
HNRNPC-232ENST00000557442 TOP2BQ02880 1626 aa18.47■□□□□ 0.55
HNRNPC-232ENST00000557442 EIF4G3O43432 1585 aaKnown RBP18.46■□□□□ 0.55
HNRNPC-232ENST00000557442 WDR97A6NE52 1622 aa18.46■□□□□ 0.55
HNRNPC-232ENST00000557442 WRNQ14191 1432 aaPredicted RBP eCLIP18.44■□□□□ 0.54
HNRNPC-232ENST00000557442 ZNF608Q9ULD9 1512 aaPredicted RBP18.42■□□□□ 0.54
HNRNPC-232ENST00000557442 RAD54L2Q9Y4B4 1467 aa18.41■□□□□ 0.54
HNRNPC-232ENST00000557442 SOGA1O94964 1423 aa18.38■□□□□ 0.53
HNRNPC-232ENST00000557442 PBRM1Q86U86 1689 aa18.35■□□□□ 0.53
HNRNPC-232ENST00000557442 ABCA5Q8WWZ7 1642 aa18.3■□□□□ 0.52
HNRNPC-232ENST00000557442 AQRO60306 1485 aaKnown RBP eCLIP18.3■□□□□ 0.522e-7■■■■□ 24.5
HNRNPC-232ENST00000557442 ABCA10Q8WWZ4 1543 aa18.29■□□□□ 0.52
HNRNPC-232ENST00000557442 CHD1O14646 1710 aa18.28■□□□□ 0.52
HNRNPC-232ENST00000557442 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
HNRNPC-232ENST00000557442 GAPVD1Q14C86 1478 aa18.22■□□□□ 0.51
HNRNPC-232ENST00000557442 GRIN2BQ13224 1484 aa18.19■□□□□ 0.5
HNRNPC-232ENST00000557442 SNAPC4Q5SXM2 1469 aa18.18■□□□□ 0.5
HNRNPC-232ENST00000557442 MAGI1Q96QZ7 1491 aaPredicted RBP18.16■□□□□ 0.5
HNRNPC-232ENST00000557442 SENP3Q9H4L4 574 aaPredicted RBP18.13■□□□□ 0.49
HNRNPC-232ENST00000557442 ADAMTS12P58397 1594 aa18.12■□□□□ 0.49
HNRNPC-232ENST00000557442 DNAJC5Q9H3Z4 198 aa18.11■□□□□ 0.49
HNRNPC-232ENST00000557442 ERICH3Q5RHP9 1530 aa18.1■□□□□ 0.49
HNRNPC-232ENST00000557442 SYNJ2O15056 1496 aa18.07■□□□□ 0.48
HNRNPC-232ENST00000557442 KIF27Q86VH2 1401 aa18.05■□□□□ 0.48
HNRNPC-232ENST00000557442 FBLN2P98095 1184 aa18.04■□□□□ 0.48
HNRNPC-232ENST00000557442 OSCARQ8IYS5 282 aa18.04■□□□□ 0.48
HNRNPC-232ENST00000557442 CUL7Q14999 1698 aa18.03■□□□□ 0.48
HNRNPC-232ENST00000557442 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
HNRNPC-232ENST00000557442 CHMP7Q8WUX9 453 aaPredicted RBP17.99■□□□□ 0.47
HNRNPC-232ENST00000557442 FHAD1B1AJZ9 1412 aa17.99■□□□□ 0.47
HNRNPC-232ENST00000557442 GRIN2AQ12879 1464 aa17.98■□□□□ 0.47
HNRNPC-232ENST00000557442 CLASP1Q7Z460 1538 aa17.96■□□□□ 0.47
HNRNPC-232ENST00000557442 CEP170Q5SW79 1584 aa17.93■□□□□ 0.46
HNRNPC-232ENST00000557442 RUSC2Q8N2Y8 1516 aa17.92■□□□□ 0.46
HNRNPC-232ENST00000557442 RIMBP3CA6NJZ7 1639 aa17.91■□□□□ 0.46
HNRNPC-232ENST00000557442 RIMBP3BA6NNM3 1639 aa17.91■□□□□ 0.46
HNRNPC-232ENST00000557442 RIMBP3Q9UFD9 1639 aa17.91■□□□□ 0.46
HNRNPC-232ENST00000557442 IGF1RP08069 1367 aa17.89■□□□□ 0.45
HNRNPC-232ENST00000557442 NUP160Q12769 1436 aa17.87■□□□□ 0.45
HNRNPC-232ENST00000557442 ARHGEF11O15085 1522 aa17.86■□□□□ 0.45
HNRNPC-232ENST00000557442 CARMIL1Q5VZK9 1371 aa17.82■□□□□ 0.44
HNRNPC-232ENST00000557442 SHROOM2Q13796 1616 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms