RNA–Protein interactions for RNA: ENST00000557344.5

APEX1-218, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 2

Gene APEX1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-218ENST00000557344 NISCHQ9Y2I1 1504 aa25.74■■□□□ 1.71
APEX1-218ENST00000557344 ABCC9O60706 1549 aa23.69■■□□□ 1.38
APEX1-218ENST00000557344 CCDC180Q9P1Z9 1646 aa23.23■■□□□ 1.31
APEX1-218ENST00000557344 DNAJC5BQ9UF47 199 aa22.67■■□□□ 1.22
APEX1-218ENST00000557344 RB1CC1Q8TDY2 1594 aa22.35■■□□□ 1.17
APEX1-218ENST00000557344 NACADO15069 1562 aa22.11■■□□□ 1.13
APEX1-218ENST00000557344 PABPN1Q86U42 306 aaKnown RBP eCLIP22.02■■□□□ 1.12
APEX1-218ENST00000557344 DCAF8L2P0C7V8 631 aa21.92■■□□□ 1.1
APEX1-218ENST00000557344 UNC13AQ9UPW8 1703 aa21.8■■□□□ 1.08
APEX1-218ENST00000557344 BICRAQ9NZM4 1560 aa21.74■■□□□ 1.07
APEX1-218ENST00000557344 MYO15BQ96JP2 1530 aa21.68■■□□□ 1.06
APEX1-218ENST00000557344 CECR2Q9BXF3 1484 aa21.39■■□□□ 1.02
APEX1-218ENST00000557344 SHROOM4Q9ULL8 1493 aa21.39■■□□□ 1.02
APEX1-218ENST00000557344 CC2D2AQ9P2K1 1620 aa21.37■■□□□ 1.01
APEX1-218ENST00000557344 DCAF1Q9Y4B6 1507 aa21.24■□□□□ 0.99
APEX1-218ENST00000557344 ZCCHC6Q5VYS8 1495 aaKnown RBP21.23■□□□□ 0.99
APEX1-218ENST00000557344 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
APEX1-218ENST00000557344 SCRIBQ14160 1630 aa21.15■□□□□ 0.98
APEX1-218ENST00000557344 DNAJC5Q9H3Z4 198 aa21.13■□□□□ 0.97
APEX1-218ENST00000557344 CUX2O14529 1486 aa20.61■□□□□ 0.89
APEX1-218ENST00000557344 ERCC6Q03468 1493 aa20.48■□□□□ 0.87
APEX1-218ENST00000557344 NCAPD3P42695 1498 aa20.45■□□□□ 0.86
APEX1-218ENST00000557344 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
APEX1-218ENST00000557344 NESP48681 1621 aa20.24■□□□□ 0.83
APEX1-218ENST00000557344 HMGXB3Q12766 1538 aa20.22■□□□□ 0.83
APEX1-218ENST00000557344 SMARCA2P51531 1590 aa20.21■□□□□ 0.83
APEX1-218ENST00000557344 SMARCA4P51532 1647 aa20.14■□□□□ 0.81
APEX1-218ENST00000557344 THOC2Q8NI27 1593 aaKnown RBP20.08■□□□□ 0.81
APEX1-218ENST00000557344 BAZ1BQ9UIG0 1483 aaKnown RBP20.06■□□□□ 0.8
APEX1-218ENST00000557344 LAMC3Q9Y6N6 1575 aa20.01■□□□□ 0.79
APEX1-218ENST00000557344 BAZ1AQ9NRL2 1556 aaPredicted RBP19.99■□□□□ 0.79
APEX1-218ENST00000557344 TRIM41Q8WV44 630 aa19.98■□□□□ 0.79
APEX1-218ENST00000557344 PEG3Q9GZU2 1588 aa19.97■□□□□ 0.79
APEX1-218ENST00000557344 PDS5BQ9NTI5 1447 aa19.93■□□□□ 0.78
APEX1-218ENST00000557344 KIF21AQ7Z4S6 1674 aa19.91■□□□□ 0.78
APEX1-218ENST00000557344 MROH2BQ7Z745 1585 aa19.83■□□□□ 0.77
APEX1-218ENST00000557344 CADPSQ9ULU8 1353 aa19.81■□□□□ 0.76
APEX1-218ENST00000557344 MRC2Q9UBG0 1479 aa19.78■□□□□ 0.76
APEX1-218ENST00000557344 WDR62O43379 1518 aa19.73■□□□□ 0.75
APEX1-218ENST00000557344 OSCARQ8IYS5 282 aa19.63■□□□□ 0.73
APEX1-218ENST00000557344 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
APEX1-218ENST00000557344 FANCD2Q9BXW9 1451 aa19.56■□□□□ 0.72
APEX1-218ENST00000557344 WIZO95785 1651 aa19.54■□□□□ 0.72
APEX1-218ENST00000557344 CFTRP13569 1480 aa19.48■□□□□ 0.71
APEX1-218ENST00000557344 URB2Q14146 1524 aaKnown RBP19.42■□□□□ 0.7
APEX1-218ENST00000557344 RIMBP3CA6NJZ7 1639 aa19.36■□□□□ 0.69
APEX1-218ENST00000557344 RIMBP3BA6NNM3 1639 aa19.36■□□□□ 0.69
APEX1-218ENST00000557344 RIMBP3Q9UFD9 1639 aa19.36■□□□□ 0.69
APEX1-218ENST00000557344 RSF1Q96T23 1441 aaPredicted RBP19.28■□□□□ 0.68
APEX1-218ENST00000557344 ARHGEF11O15085 1522 aa19.27■□□□□ 0.68
APEX1-218ENST00000557344 TOP2AP11388 1531 aaKnown RBP19.27■□□□□ 0.68
APEX1-218ENST00000557344 ZNF608Q9ULD9 1512 aaPredicted RBP19.26■□□□□ 0.67
APEX1-218ENST00000557344 IFT140Q96RY7 1462 aa19.24■□□□□ 0.67
APEX1-218ENST00000557344 CYB5RLQ6IPT4 315 aa19.19■□□□□ 0.66
APEX1-218ENST00000557344 PRDM2Q13029 1718 aa19.15■□□□□ 0.66
APEX1-218ENST00000557344 TOPBP1Q92547 1522 aa19.14■□□□□ 0.65
APEX1-218ENST00000557344 TRHP20396 242 aaPredicted RBP19.09■□□□□ 0.65
APEX1-218ENST00000557344 EIF4G3O43432 1585 aaKnown RBP19.09■□□□□ 0.65
APEX1-218ENST00000557344 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
APEX1-218ENST00000557344 ABCC8Q09428 1581 aa19.07■□□□□ 0.64
APEX1-218ENST00000557344 ARAP1Q96P48 1450 aa19.06■□□□□ 0.64
APEX1-218ENST00000557344 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.643e-9■■■□□ 17.9
APEX1-218ENST00000557344 DNMBPQ6XZF7 1577 aa19.01■□□□□ 0.63
APEX1-218ENST00000557344 CHD1O14646 1710 aa19■□□□□ 0.63
APEX1-218ENST00000557344 TARBP1Q13395 1621 aaKnown RBP19■□□□□ 0.63
APEX1-218ENST00000557344 FBLN2P98095 1184 aa18.99■□□□□ 0.63
APEX1-218ENST00000557344 POLA1P09884 1462 aaPredicted RBP18.92■□□□□ 0.62
APEX1-218ENST00000557344 RAD54L2Q9Y4B4 1467 aa18.86■□□□□ 0.61
APEX1-218ENST00000557344 TDRD9Q8NDG6 1382 aaKnown RBP18.86■□□□□ 0.61
APEX1-218ENST00000557344 AEBP2Q6ZN18 517 aaPredicted RBP18.85■□□□□ 0.61
APEX1-218ENST00000557344 SOGA1O94964 1423 aa18.84■□□□□ 0.61
APEX1-218ENST00000557344 CLASP1Q7Z460 1538 aa18.83■□□□□ 0.6
APEX1-218ENST00000557344 SNAPC4Q5SXM2 1469 aa18.81■□□□□ 0.6
APEX1-218ENST00000557344 CHMP7Q8WUX9 453 aaPredicted RBP18.79■□□□□ 0.6
APEX1-218ENST00000557344 SYNJ1O43426 1573 aa18.76■□□□□ 0.59
APEX1-218ENST00000557344 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
APEX1-218ENST00000557344 MAGI1Q96QZ7 1491 aaPredicted RBP18.75■□□□□ 0.59
APEX1-218ENST00000557344 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
APEX1-218ENST00000557344 GRIN2BQ13224 1484 aa18.71■□□□□ 0.59
APEX1-218ENST00000557344 SYNJ2O15056 1496 aa18.7■□□□□ 0.58
APEX1-218ENST00000557344 GAPVD1Q14C86 1478 aa18.66■□□□□ 0.58
APEX1-218ENST00000557344 CUX1P39880 1505 aa18.65■□□□□ 0.58
APEX1-218ENST00000557344 PBRM1Q86U86 1689 aa18.54■□□□□ 0.56
APEX1-218ENST00000557344 ERCC6L2Q5T890 1561 aa18.51■□□□□ 0.55
APEX1-218ENST00000557344 ABCA10Q8WWZ4 1543 aa18.5■□□□□ 0.55
APEX1-218ENST00000557344 ABCA5Q8WWZ7 1642 aa18.49■□□□□ 0.55
APEX1-218ENST00000557344 GRIN2AQ12879 1464 aa18.46■□□□□ 0.55
APEX1-218ENST00000557344 NUP160Q12769 1436 aa18.44■□□□□ 0.54
APEX1-218ENST00000557344 CEP170Q5SW79 1584 aa18.43■□□□□ 0.54
APEX1-218ENST00000557344 ADAMTS12P58397 1594 aa18.37■□□□□ 0.53
APEX1-218ENST00000557344 SHROOM2Q13796 1616 aa18.37■□□□□ 0.53
APEX1-218ENST00000557344 WRNQ14191 1432 aaPredicted RBP eCLIP18.35■□□□□ 0.535e-6■■■■■ 29.2
APEX1-218ENST00000557344 FHAD1B1AJZ9 1412 aa18.34■□□□□ 0.53
APEX1-218ENST00000557344 KIF13AQ9H1H9 1805 aa18.34■□□□□ 0.53
APEX1-218ENST00000557344 PRG4Q92954 1404 aaPredicted RBP18.29■□□□□ 0.52
APEX1-218ENST00000557344 JPH4Q96JJ6 628 aa18.27■□□□□ 0.52
APEX1-218ENST00000557344 FAM69CQ0P6D2 419 aa18.26■□□□□ 0.51
APEX1-218ENST00000557344 ERICH3Q5RHP9 1530 aa18.25■□□□□ 0.51
APEX1-218ENST00000557344 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
APEX1-218ENST00000557344 TOP2BQ02880 1626 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 150.7 ms