Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CSMD1Q96PZ7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSMD1Q96PZ7 ABHD17AP1-201ENST00000358206 933 ntBASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.23■□□□□ 0.83
CSMD1Q96PZ7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 SLC47A1P1-202ENST00000449666 945 ntBASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CSMD1Q96PZ7 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.21■□□□□ 0.83
CSMD1Q96PZ7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CSMD1Q96PZ7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSMD1Q96PZ7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CSMD1Q96PZ7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.21■□□□□ 0.83
CSMD1Q96PZ7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.2■□□□□ 0.82
CSMD1Q96PZ7 IRS3P-201ENST00000223076 1006 ntBASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CSMD1Q96PZ7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CSMD1Q96PZ7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 AL031602.1-201ENST00000633169 911 ntBASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 BX255925.1-201ENST00000566954 1854 ntBASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 SYT6-210ENST00000641643 1587 ntBASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CSMD1Q96PZ7 AL449106.1-201ENST00000608517 1980 ntBASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 AL137784.2-201ENST00000607332 1000 ntBASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CSMD1Q96PZ7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 AC034268.1-201ENST00000441047 882 ntBASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 AP002414.2-202ENST00000590929 1450 ntBASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CSMD1Q96PZ7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms