Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PDLIM3Q53GG5 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 RP9P-202ENST00000450133 1212 ntBASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 ECEL1P2-201ENST00000461596 1295 ntBASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PDLIM3Q53GG5 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PDLIM3Q53GG5 AP003733.4-201ENST00000623785 1697 ntBASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PDLIM3Q53GG5 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 AL356441.2-201ENST00000443009 864 ntBASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 AC008406.3-201ENST00000620001 1374 ntBASIC19.19■□□□□ 0.66
PDLIM3Q53GG5 KRT8P33-201ENST00000508125 1423 ntBASIC19.18■□□□□ 0.66
PDLIM3Q53GG5 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM3Q53GG5 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM3Q53GG5 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PDLIM3Q53GG5 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.18■□□□□ 0.66
PDLIM3Q53GG5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PDLIM3Q53GG5 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 AC097639.1-201ENST00000565519 1891 ntBASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM3Q53GG5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM3Q53GG5 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 BHLHE23-202ENST00000612929 1109 ntBASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM3Q53GG5 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms