Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
PCDHA1Q9Y5I3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHA1Q9Y5I3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHA1Q9Y5I3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHA1Q9Y5I3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHA1Q9Y5I3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
PCDHA1Q9Y5I3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
PCDHA1Q9Y5I3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.2■■□□□ 1.95
PCDHA1Q9Y5I3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC27.2■■□□□ 1.94
PCDHA1Q9Y5I3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PCDHA1Q9Y5I3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
PCDHA1Q9Y5I3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PCDHA1Q9Y5I3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA1Q9Y5I3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA1Q9Y5I3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA1Q9Y5I3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.17■■□□□ 1.94
PCDHA1Q9Y5I3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PCDHA1Q9Y5I3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC27.16■■□□□ 1.94
PCDHA1Q9Y5I3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHA1Q9Y5I3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHA1Q9Y5I3 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHA1Q9Y5I3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
PCDHA1Q9Y5I3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
PCDHA1Q9Y5I3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
PCDHA1Q9Y5I3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC27.15■■□□□ 1.94
PCDHA1Q9Y5I3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
PCDHA1Q9Y5I3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
PCDHA1Q9Y5I3 HES6-204ENST00000409182 863 ntTSL 2 BASIC27.14■■□□□ 1.94
PCDHA1Q9Y5I3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.14■■□□□ 1.94
PCDHA1Q9Y5I3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
PCDHA1Q9Y5I3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
PCDHA1Q9Y5I3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
PCDHA1Q9Y5I3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 AC011551.1-201ENST00000614101 683 ntBASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PCDHA1Q9Y5I3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 AC239859.2-201ENST00000444165 318 ntBASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA1Q9Y5I3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 Z92544.1-202ENST00000571933 1220 ntBASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHA1Q9Y5I3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCDHA1Q9Y5I3 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCDHA1Q9Y5I3 MIR4281-201ENST00000580852 62 ntBASIC27.1■■□□□ 1.93
PCDHA1Q9Y5I3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.1■■□□□ 1.93
PCDHA1Q9Y5I3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 GAK-223ENST00000628912 497 ntTSL 5 BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA1Q9Y5I3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PCDHA1Q9Y5I3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC27.08■■□□□ 1.93
PCDHA1Q9Y5I3 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PCDHA1Q9Y5I3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PCDHA1Q9Y5I3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.08■■□□□ 1.93
PCDHA1Q9Y5I3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 BX664725.1-201ENST00000438252 379 ntBASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 AC137630.3-201ENST00000607245 391 ntBASIC27.07■■□□□ 1.92
PCDHA1Q9Y5I3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms