Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RFC3P40938 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RFC3P40938 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RFC3P40938 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC3P40938 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.57■■□□□ 1.04
RFC3P40938 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RFC3P40938 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC3P40938 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC3P40938 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC3P40938 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RFC3P40938 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RFC3P40938 MIR4787-201ENST00000607364 84 ntBASIC21.57■■□□□ 1.04
RFC3P40938 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RFC3P40938 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
RFC3P40938 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RFC3P40938 AC096887.2-201ENST00000623443 1957 ntBASIC21.56■■□□□ 1.04
RFC3P40938 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RFC3P40938 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.56■■□□□ 1.04
RFC3P40938 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RFC3P40938 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.56■■□□□ 1.04
RFC3P40938 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
RFC3P40938 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
RFC3P40938 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFC3P40938 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RFC3P40938 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFC3P40938 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.55■■□□□ 1.04
RFC3P40938 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFC3P40938 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFC3P40938 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.54■■□□□ 1.04
RFC3P40938 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RFC3P40938 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RFC3P40938 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RFC3P40938 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.54■■□□□ 1.04
RFC3P40938 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.54■■□□□ 1.04
RFC3P40938 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RFC3P40938 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.54■■□□□ 1.04
RFC3P40938 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.54■■□□□ 1.04
RFC3P40938 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RFC3P40938 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RFC3P40938 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
RFC3P40938 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.53■■□□□ 1.04
RFC3P40938 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.53■■□□□ 1.04
RFC3P40938 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.53■■□□□ 1.04
RFC3P40938 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RFC3P40938 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.53■■□□□ 1.04
RFC3P40938 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.53■■□□□ 1.04
RFC3P40938 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RFC3P40938 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.52■■□□□ 1.04
RFC3P40938 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFC3P40938 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RFC3P40938 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RFC3P40938 TSPY9P-201ENST00000440215 945 ntBASIC21.51■■□□□ 1.03
RFC3P40938 TSPY11P-201ENST00000442607 1045 ntBASIC21.51■■□□□ 1.03
RFC3P40938 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
RFC3P40938 MIR4281-201ENST00000580852 62 ntBASIC21.51■■□□□ 1.03
RFC3P40938 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RFC3P40938 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RFC3P40938 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
RFC3P40938 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RFC3P40938 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.5■■□□□ 1.03
RFC3P40938 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.5■■□□□ 1.03
RFC3P40938 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
RFC3P40938 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFC3P40938 FOXO3B-201ENST00000395675 1928 ntBASIC21.49■■□□□ 1.03
RFC3P40938 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RFC3P40938 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFC3P40938 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFC3P40938 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFC3P40938 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFC3P40938 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFC3P40938 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
RFC3P40938 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFC3P40938 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.48■■□□□ 1.03
RFC3P40938 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFC3P40938 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.48■■□□□ 1.03
RFC3P40938 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.48■■□□□ 1.03
RFC3P40938 UNC93B8-201ENST00000511903 705 ntBASIC21.48■■□□□ 1.03
RFC3P40938 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.48■■□□□ 1.03
RFC3P40938 AC137630.3-201ENST00000607245 391 ntBASIC21.48■■□□□ 1.03
RFC3P40938 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.48■■□□□ 1.03
RFC3P40938 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFC3P40938 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RFC3P40938 AC092803.2-201ENST00000564287 1899 ntBASIC21.47■■□□□ 1.03
RFC3P40938 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.47■■□□□ 1.03
RFC3P40938 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.47■■□□□ 1.03
RFC3P40938 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.47■■□□□ 1.03
RFC3P40938 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RFC3P40938 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.47■■□□□ 1.03
RFC3P40938 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RFC3P40938 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
RFC3P40938 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RFC3P40938 AC010501.1-201ENST00000606270 1962 ntBASIC21.47■■□□□ 1.03
RFC3P40938 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.46■■□□□ 1.03
RFC3P40938 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms