Protein–RNA interactions for Protein: P18846

ATF1, Cyclic AMP-dependent transcription factor ATF-1, humanhuman

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1P18846 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.69■□□□□ 0.9
ATF1P18846 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ATF1P18846 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATF1P18846 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATF1P18846 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.68■□□□□ 0.9
ATF1P18846 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ATF1P18846 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATF1P18846 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATF1P18846 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATF1P18846 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.68■□□□□ 0.9
ATF1P18846 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATF1P18846 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
ATF1P18846 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATF1P18846 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.66■□□□□ 0.9
ATF1P18846 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.66■□□□□ 0.9
ATF1P18846 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATF1P18846 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.65■□□□□ 0.9
ATF1P18846 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.65■□□□□ 0.9
ATF1P18846 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ATF1P18846 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATF1P18846 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.64■□□□□ 0.9
ATF1P18846 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
ATF1P18846 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ATF1P18846 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.64■□□□□ 0.89
ATF1P18846 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.64■□□□□ 0.89
ATF1P18846 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.64■□□□□ 0.89
ATF1P18846 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATF1P18846 AC141586.4-201ENST00000624558 1573 ntBASIC20.63■□□□□ 0.89
ATF1P18846 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.63■□□□□ 0.89
ATF1P18846 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATF1P18846 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATF1P18846 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
ATF1P18846 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ATF1P18846 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ATF1P18846 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATF1P18846 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.62■□□□□ 0.89
ATF1P18846 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATF1P18846 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.62■□□□□ 0.89
ATF1P18846 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.62■□□□□ 0.89
ATF1P18846 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATF1P18846 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ATF1P18846 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
ATF1P18846 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATF1P18846 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATF1P18846 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.61■□□□□ 0.89
ATF1P18846 DUSP8P5-201ENST00000422884 1815 ntBASIC20.61■□□□□ 0.89
ATF1P18846 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.61■□□□□ 0.89
ATF1P18846 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATF1P18846 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.61■□□□□ 0.89
ATF1P18846 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATF1P18846 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATF1P18846 AC079834.2-201ENST00000609776 1949 ntBASIC20.59■□□□□ 0.89
ATF1P18846 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.59■□□□□ 0.89
ATF1P18846 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.59■□□□□ 0.89
ATF1P18846 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATF1P18846 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
ATF1P18846 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATF1P18846 AL157400.5-201ENST00000507624 621 ntBASIC20.58■□□□□ 0.89
ATF1P18846 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.58■□□□□ 0.89
ATF1P18846 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ATF1P18846 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATF1P18846 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
ATF1P18846 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATF1P18846 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.57■□□□□ 0.88
ATF1P18846 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.57■□□□□ 0.88
ATF1P18846 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
ATF1P18846 MIR7108-201ENST00000614319 87 ntBASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATF1P18846 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms