Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 KRT125P-201ENST00000546827 989 ntBASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 AC010501.1-201ENST00000606270 1962 ntBASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 AC120024.1-201ENST00000562672 995 ntBASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 KRT16P3-201ENST00000439127 1283 ntBASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 AC092803.2-201ENST00000564287 1899 ntBASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SMCHD1A6NHR9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SMCHD1A6NHR9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC27.28■■□□□ 1.96
SMCHD1A6NHR9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC27.28■■□□□ 1.96
SMCHD1A6NHR9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
SMCHD1A6NHR9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SMCHD1A6NHR9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC27.28■■□□□ 1.96
SMCHD1A6NHR9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC27.27■■□□□ 1.96
SMCHD1A6NHR9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC27.26■■□□□ 1.96
SMCHD1A6NHR9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
SMCHD1A6NHR9 AC137630.3-201ENST00000607245 391 ntBASIC27.26■■□□□ 1.95
SMCHD1A6NHR9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.26■■□□□ 1.95
SMCHD1A6NHR9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMCHD1A6NHR9 AC008406.3-201ENST00000620001 1374 ntBASIC27.25■■□□□ 1.95
SMCHD1A6NHR9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMCHD1A6NHR9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27.25■■□□□ 1.95
SMCHD1A6NHR9 AC097639.1-201ENST00000565519 1891 ntBASIC27.25■■□□□ 1.95
SMCHD1A6NHR9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SMCHD1A6NHR9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SMCHD1A6NHR9 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SMCHD1A6NHR9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SMCHD1A6NHR9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SMCHD1A6NHR9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 AC131281.2-201ENST00000520478 145 ntBASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SMCHD1A6NHR9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SMCHD1A6NHR9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
SMCHD1A6NHR9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
SMCHD1A6NHR9 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
SMCHD1A6NHR9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
SMCHD1A6NHR9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
SMCHD1A6NHR9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
SMCHD1A6NHR9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.2■■□□□ 1.94
SMCHD1A6NHR9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
SMCHD1A6NHR9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.2■■□□□ 1.94
SMCHD1A6NHR9 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.2■■□□□ 1.94
SMCHD1A6NHR9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27.19■■□□□ 1.94
SMCHD1A6NHR9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
SMCHD1A6NHR9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SMCHD1A6NHR9 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SMCHD1A6NHR9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SMCHD1A6NHR9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC27.17■■□□□ 1.94
SMCHD1A6NHR9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
SMCHD1A6NHR9 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SMCHD1A6NHR9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SMCHD1A6NHR9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC27.17■■□□□ 1.94
SMCHD1A6NHR9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SMCHD1A6NHR9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.16■■□□□ 1.94
SMCHD1A6NHR9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMCHD1A6NHR9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC27.16■■□□□ 1.94
SMCHD1A6NHR9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC27.16■■□□□ 1.94
SMCHD1A6NHR9 AC021242.3-201ENST00000607598 1377 ntBASIC27.15■■□□□ 1.94
SMCHD1A6NHR9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
SMCHD1A6NHR9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.15■■□□□ 1.94
SMCHD1A6NHR9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 518.5 ms