Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC45.72■■■■■ 4.91
SHROOM4Q9ULL8 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC45.71■■■■■ 4.91
SHROOM4Q9ULL8 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC45.71■■■■■ 4.91
SHROOM4Q9ULL8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC45.71■■■■■ 4.91
SHROOM4Q9ULL8 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC45.71■■■■■ 4.91
SHROOM4Q9ULL8 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC45.71■■■■■ 4.91
SHROOM4Q9ULL8 AP004609.3-201ENST00000610705 1884 ntBASIC45.71■■■■■ 4.91
SHROOM4Q9ULL8 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC45.7■■■■■ 4.91
SHROOM4Q9ULL8 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC45.7■■■■■ 4.91
SHROOM4Q9ULL8 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC45.7■■■■■ 4.91
SHROOM4Q9ULL8 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC45.7■■■■■ 4.91
SHROOM4Q9ULL8 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC45.69■■■■■ 4.91
SHROOM4Q9ULL8 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC45.69■■■■■ 4.9
SHROOM4Q9ULL8 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC45.68■■■■■ 4.9
SHROOM4Q9ULL8 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC45.68■■■■■ 4.9
SHROOM4Q9ULL8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC45.68■■■■■ 4.9
SHROOM4Q9ULL8 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC45.68■■■■■ 4.9
SHROOM4Q9ULL8 AC096631.2-201ENST00000436136 790 ntBASIC45.67■■■■■ 4.9
SHROOM4Q9ULL8 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC45.67■■■■■ 4.9
SHROOM4Q9ULL8 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC45.67■■■■■ 4.9
SHROOM4Q9ULL8 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC45.66■■■■■ 4.9
SHROOM4Q9ULL8 AC104564.3-201ENST00000582367 638 ntBASIC45.66■■■■■ 4.9
SHROOM4Q9ULL8 AL512631.2-201ENST00000604634 923 ntBASIC45.66■■■■■ 4.9
SHROOM4Q9ULL8 AC092666.2-201ENST00000613287 246 ntBASIC45.65■■■■■ 4.9
SHROOM4Q9ULL8 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC45.65■■■■■ 4.9
SHROOM4Q9ULL8 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 KRT18P10-201ENST00000388836 1287 ntBASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC45.64■■■■■ 4.9
SHROOM4Q9ULL8 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC45.63■■■■■ 4.9
SHROOM4Q9ULL8 EBPL-204ENST00000378272 766 ntTSL 3 BASIC45.62■■■■■ 4.89
SHROOM4Q9ULL8 MIR4466-201ENST00000606121 54 ntBASIC45.61■■■■■ 4.89
SHROOM4Q9ULL8 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC45.61■■■■■ 4.89
SHROOM4Q9ULL8 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC45.61■■■■■ 4.89
SHROOM4Q9ULL8 ZNRF2P3-201ENST00000424200 374 ntBASIC45.6■■■■■ 4.89
SHROOM4Q9ULL8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC45.6■■■■■ 4.89
SHROOM4Q9ULL8 MIR6724-1-201ENST00000616420 92 ntBASIC45.6■■■■■ 4.89
SHROOM4Q9ULL8 MIR6724-2-201ENST00000616483 92 ntBASIC45.6■■■■■ 4.89
SHROOM4Q9ULL8 MIR6724-4-201ENST00000617390 92 ntBASIC45.6■■■■■ 4.89
SHROOM4Q9ULL8 MIR6724-3-201ENST00000622482 92 ntBASIC45.6■■■■■ 4.89
SHROOM4Q9ULL8 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC45.59■■■■■ 4.89
SHROOM4Q9ULL8 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC45.58■■■■■ 4.89
SHROOM4Q9ULL8 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC45.58■■■■■ 4.89
SHROOM4Q9ULL8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC45.58■■■■■ 4.89
SHROOM4Q9ULL8 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC45.58■■■■■ 4.89
SHROOM4Q9ULL8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC45.56■■■■■ 4.88
SHROOM4Q9ULL8 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC45.56■■■■■ 4.88
SHROOM4Q9ULL8 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC45.56■■■■■ 4.88
SHROOM4Q9ULL8 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC45.55■■■■■ 4.88
SHROOM4Q9ULL8 AC120024.1-201ENST00000562672 995 ntBASIC45.54■■■■■ 4.88
SHROOM4Q9ULL8 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC45.53■■■■■ 4.88
SHROOM4Q9ULL8 MIR4281-201ENST00000580852 62 ntBASIC45.53■■■■■ 4.88
SHROOM4Q9ULL8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC45.52■■■■■ 4.88
SHROOM4Q9ULL8 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC45.52■■■■■ 4.88
SHROOM4Q9ULL8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC45.51■■■■■ 4.88
SHROOM4Q9ULL8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC45.51■■■■■ 4.88
SHROOM4Q9ULL8 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC45.5■■■■■ 4.87
SHROOM4Q9ULL8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC45.5■■■■■ 4.87
SHROOM4Q9ULL8 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC45.5■■■■■ 4.87
SHROOM4Q9ULL8 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC45.5■■■■■ 4.87
SHROOM4Q9ULL8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC45.49■■■■■ 4.87
SHROOM4Q9ULL8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC45.49■■■■■ 4.87
SHROOM4Q9ULL8 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC45.49■■■■■ 4.87
SHROOM4Q9ULL8 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC45.49■■■■■ 4.87
SHROOM4Q9ULL8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC45.48■■■■■ 4.87
SHROOM4Q9ULL8 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC45.47■■■■■ 4.87
SHROOM4Q9ULL8 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC45.47■■■■■ 4.87
SHROOM4Q9ULL8 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC45.47■■■■■ 4.87
SHROOM4Q9ULL8 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC45.47■■■■■ 4.87
SHROOM4Q9ULL8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC45.46■■■■■ 4.87
SHROOM4Q9ULL8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC45.46■■■■■ 4.87
SHROOM4Q9ULL8 SHF-208ENST00000560734 1731 ntTSL 3 BASIC45.45■■■■■ 4.87
SHROOM4Q9ULL8 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC45.45■■■■■ 4.87
SHROOM4Q9ULL8 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC45.45■■■■■ 4.87
SHROOM4Q9ULL8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC45.44■■■■■ 4.87
SHROOM4Q9ULL8 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC45.44■■■■■ 4.86
SHROOM4Q9ULL8 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC45.43■■■■■ 4.86
SHROOM4Q9ULL8 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC45.43■■■■■ 4.86
SHROOM4Q9ULL8 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC45.43■■■■■ 4.86
SHROOM4Q9ULL8 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC45.43■■■■■ 4.86
SHROOM4Q9ULL8 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 AC010997.5-201ENST00000609182 354 ntBASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 AC135279.3-201ENST00000610945 1311 ntBASIC45.42■■■■■ 4.86
SHROOM4Q9ULL8 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC45.41■■■■■ 4.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms