Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SLC6A10P-202ENST00000431994 2058 ntBASIC20.59■□□□□ 0.89
NKX3-1Q99801 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX3-1Q99801 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.59■□□□□ 0.89
NKX3-1Q99801 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.59■□□□□ 0.89
NKX3-1Q99801 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NKX3-1Q99801 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX3-1Q99801 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
NKX3-1Q99801 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX3-1Q99801 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX3-1Q99801 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX3-1Q99801 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NKX3-1Q99801 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
NKX3-1Q99801 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
NKX3-1Q99801 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NKX3-1Q99801 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX3-1Q99801 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NKX3-1Q99801 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NKX3-1Q99801 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.57■□□□□ 0.88
NKX3-1Q99801 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX3-1Q99801 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NKX3-1Q99801 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NKX3-1Q99801 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX3-1Q99801 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
NKX3-1Q99801 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.56■□□□□ 0.88
NKX3-1Q99801 MIR4449-201ENST00000578365 66 ntBASIC20.56■□□□□ 0.88
NKX3-1Q99801 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NKX3-1Q99801 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NKX3-1Q99801 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX3-1Q99801 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.55■□□□□ 0.88
NKX3-1Q99801 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX3-1Q99801 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NKX3-1Q99801 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NKX3-1Q99801 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NKX3-1Q99801 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.55■□□□□ 0.88
NKX3-1Q99801 AC097639.1-201ENST00000565519 1891 ntBASIC20.54■□□□□ 0.88
NKX3-1Q99801 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX3-1Q99801 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NKX3-1Q99801 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
NKX3-1Q99801 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX3-1Q99801 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NKX3-1Q99801 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NKX3-1Q99801 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
NKX3-1Q99801 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NKX3-1Q99801 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NKX3-1Q99801 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NKX3-1Q99801 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NKX3-1Q99801 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX3-1Q99801 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX3-1Q99801 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX3-1Q99801 AC133561.1-201ENST00000568600 2415 ntBASIC20.51■□□□□ 0.87
NKX3-1Q99801 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.51■□□□□ 0.87
NKX3-1Q99801 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX3-1Q99801 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX3-1Q99801 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.51■□□□□ 0.87
NKX3-1Q99801 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX3-1Q99801 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX3-1Q99801 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX3-1Q99801 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX3-1Q99801 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX3-1Q99801 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.5■□□□□ 0.87
NKX3-1Q99801 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
NKX3-1Q99801 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX3-1Q99801 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX3-1Q99801 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX3-1Q99801 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX3-1Q99801 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
NKX3-1Q99801 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX3-1Q99801 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX3-1Q99801 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX3-1Q99801 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
NKX3-1Q99801 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NKX3-1Q99801 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NKX3-1Q99801 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX3-1Q99801 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX3-1Q99801 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NKX3-1Q99801 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.47■□□□□ 0.87
NKX3-1Q99801 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NKX3-1Q99801 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms