Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.13■□□□□ 0.97
LIMS3P0CW19 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LIMS3P0CW19 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.12■□□□□ 0.97
LIMS3P0CW19 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.12■□□□□ 0.97
LIMS3P0CW19 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LIMS3P0CW19 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMS3P0CW19 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMS3P0CW19 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIMS3P0CW19 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMS3P0CW19 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.11■□□□□ 0.97
LIMS3P0CW19 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LIMS3P0CW19 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.11■□□□□ 0.97
LIMS3P0CW19 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LIMS3P0CW19 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.11■□□□□ 0.97
LIMS3P0CW19 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.11■□□□□ 0.97
LIMS3P0CW19 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.1■□□□□ 0.97
LIMS3P0CW19 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LIMS3P0CW19 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
LIMS3P0CW19 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LIMS3P0CW19 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 HLA-V-202ENST00000446817 847 ntBASIC21.1■□□□□ 0.97
LIMS3P0CW19 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.1■□□□□ 0.97
LIMS3P0CW19 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.1■□□□□ 0.97
LIMS3P0CW19 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMS3P0CW19 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMS3P0CW19 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMS3P0CW19 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.09■□□□□ 0.97
LIMS3P0CW19 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LIMS3P0CW19 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LIMS3P0CW19 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMS3P0CW19 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LIMS3P0CW19 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
LIMS3P0CW19 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.08■□□□□ 0.97
LIMS3P0CW19 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
LIMS3P0CW19 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.08■□□□□ 0.97
LIMS3P0CW19 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMS3P0CW19 AC004812.2-201ENST00000611079 2094 ntBASIC21.08■□□□□ 0.97
LIMS3P0CW19 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIMS3P0CW19 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
LIMS3P0CW19 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
LIMS3P0CW19 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMS3P0CW19 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMS3P0CW19 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMS3P0CW19 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.08■□□□□ 0.97
LIMS3P0CW19 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIMS3P0CW19 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.08■□□□□ 0.96
LIMS3P0CW19 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMS3P0CW19 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMS3P0CW19 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMS3P0CW19 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMS3P0CW19 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMS3P0CW19 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMS3P0CW19 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
LIMS3P0CW19 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
LIMS3P0CW19 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.07■□□□□ 0.96
LIMS3P0CW19 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
LIMS3P0CW19 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 DUSP8P5-201ENST00000422884 1815 ntBASIC21.06■□□□□ 0.96
LIMS3P0CW19 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.06■□□□□ 0.96
LIMS3P0CW19 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LIMS3P0CW19 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LIMS3P0CW19 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIMS3P0CW19 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIMS3P0CW19 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIMS3P0CW19 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIMS3P0CW19 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIMS3P0CW19 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIMS3P0CW19 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
LIMS3P0CW19 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.04■□□□□ 0.96
LIMS3P0CW19 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.04■□□□□ 0.96
LIMS3P0CW19 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
LIMS3P0CW19 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.04■□□□□ 0.96
LIMS3P0CW19 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMS3P0CW19 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMS3P0CW19 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMS3P0CW19 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.02■□□□□ 0.96
LIMS3P0CW19 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMS3P0CW19 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMS3P0CW19 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LIMS3P0CW19 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMS3P0CW19 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms