Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1BO60663 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
LMX1BO60663 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1BO60663 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1BO60663 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1BO60663 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.79■□□□□ 0.92
LMX1BO60663 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1BO60663 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1BO60663 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.78■□□□□ 0.92
LMX1BO60663 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LMX1BO60663 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.78■□□□□ 0.92
LMX1BO60663 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1BO60663 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1BO60663 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.78■□□□□ 0.92
LMX1BO60663 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.78■□□□□ 0.92
LMX1BO60663 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.78■□□□□ 0.92
LMX1BO60663 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1BO60663 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1BO60663 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LMX1BO60663 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LMX1BO60663 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
LMX1BO60663 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LMX1BO60663 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.77■□□□□ 0.92
LMX1BO60663 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LMX1BO60663 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.77■□□□□ 0.91
LMX1BO60663 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.77■□□□□ 0.91
LMX1BO60663 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
LMX1BO60663 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.76■□□□□ 0.91
LMX1BO60663 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LMX1BO60663 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
LMX1BO60663 AL157400.5-201ENST00000507624 621 ntBASIC20.75■□□□□ 0.91
LMX1BO60663 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
LMX1BO60663 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LMX1BO60663 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.74■□□□□ 0.91
LMX1BO60663 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.74■□□□□ 0.91
LMX1BO60663 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.74■□□□□ 0.91
LMX1BO60663 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
LMX1BO60663 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.73■□□□□ 0.91
LMX1BO60663 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1BO60663 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.73■□□□□ 0.91
LMX1BO60663 AC007029.1-201ENST00000604183 313 ntBASIC20.73■□□□□ 0.91
LMX1BO60663 AC129492.7-201ENST00000622992 756 ntBASIC20.73■□□□□ 0.91
LMX1BO60663 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1BO60663 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LMX1BO60663 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LMX1BO60663 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.72■□□□□ 0.91
LMX1BO60663 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1BO60663 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LMX1BO60663 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LMX1BO60663 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1BO60663 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1BO60663 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LMX1BO60663 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1BO60663 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.71■□□□□ 0.91
LMX1BO60663 DUX4L18-201ENST00000553347 1267 ntBASIC20.71■□□□□ 0.91
LMX1BO60663 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.71■□□□□ 0.91
LMX1BO60663 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1BO60663 AC133552.2-201ENST00000619106 1032 ntBASIC20.71■□□□□ 0.91
LMX1BO60663 SLC6A10P-202ENST00000431994 2058 ntBASIC20.71■□□□□ 0.91
LMX1BO60663 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1BO60663 AC097639.1-201ENST00000565519 1891 ntBASIC20.71■□□□□ 0.91
LMX1BO60663 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.7■□□□□ 0.9
LMX1BO60663 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.7■□□□□ 0.9
LMX1BO60663 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1BO60663 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1BO60663 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1BO60663 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1BO60663 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1BO60663 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LMX1BO60663 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1BO60663 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1BO60663 AL592293.1-201ENST00000502889 1188 ntBASIC20.69■□□□□ 0.9
LMX1BO60663 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1BO60663 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LMX1BO60663 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LMX1BO60663 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1BO60663 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LMX1BO60663 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.68■□□□□ 0.9
LMX1BO60663 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1BO60663 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms