Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.47■■□□□ 1.99
SMCHD1A6NHR9 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMCHD1A6NHR9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.47■■□□□ 1.99
SMCHD1A6NHR9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SMCHD1A6NHR9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SMCHD1A6NHR9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.99
SMCHD1A6NHR9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
SMCHD1A6NHR9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.98
SMCHD1A6NHR9 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.98
SMCHD1A6NHR9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC27.45■■□□□ 1.98
SMCHD1A6NHR9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC27.45■■□□□ 1.98
SMCHD1A6NHR9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SMCHD1A6NHR9 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SMCHD1A6NHR9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SMCHD1A6NHR9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SMCHD1A6NHR9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
SMCHD1A6NHR9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
SMCHD1A6NHR9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC27.42■■□□□ 1.98
SMCHD1A6NHR9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27.42■■□□□ 1.98
SMCHD1A6NHR9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMCHD1A6NHR9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMCHD1A6NHR9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC27.41■■□□□ 1.98
SMCHD1A6NHR9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SMCHD1A6NHR9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMCHD1A6NHR9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 MIR4281-201ENST00000580852 62 ntBASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.4■■□□□ 1.98
SMCHD1A6NHR9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC27.39■■□□□ 1.98
SMCHD1A6NHR9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.39■■□□□ 1.98
SMCHD1A6NHR9 MIR4787-201ENST00000607364 84 ntBASIC27.39■■□□□ 1.98
SMCHD1A6NHR9 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC27.39■■□□□ 1.97
SMCHD1A6NHR9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.38■■□□□ 1.97
SMCHD1A6NHR9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SMCHD1A6NHR9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMCHD1A6NHR9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMCHD1A6NHR9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 KRT18P24-201ENST00000344739 1156 ntBASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 BX664725.1-201ENST00000438252 379 ntBASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SMCHD1A6NHR9 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMCHD1A6NHR9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMCHD1A6NHR9 UNC93B8-201ENST00000511903 705 ntBASIC27.33■■□□□ 1.97
SMCHD1A6NHR9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
SMCHD1A6NHR9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SMCHD1A6NHR9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SMCHD1A6NHR9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
SMCHD1A6NHR9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.96
SMCHD1A6NHR9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.33■■□□□ 1.96
SMCHD1A6NHR9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.32■■□□□ 1.96
SMCHD1A6NHR9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.32■■□□□ 1.96
SMCHD1A6NHR9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SMCHD1A6NHR9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SMCHD1A6NHR9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.32■■□□□ 1.96
SMCHD1A6NHR9 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMCHD1A6NHR9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.31■■□□□ 1.96
SMCHD1A6NHR9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SMCHD1A6NHR9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SMCHD1A6NHR9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 270.4 ms