Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.29■■□□□ 1
USP9XQ93008 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.29■■□□□ 1
USP9XQ93008 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.29■■□□□ 1
USP9XQ93008 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP9XQ93008 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.28■■□□□ 1
USP9XQ93008 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP9XQ93008 AL139393.2-201ENST00000608721 2025 ntBASIC21.28■■□□□ 1
USP9XQ93008 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.28■■□□□ 1
USP9XQ93008 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.28■■□□□ 1
USP9XQ93008 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.28■■□□□ 1
USP9XQ93008 AC097381.1-201ENST00000429019 1296 ntBASIC21.28■■□□□ 1
USP9XQ93008 MTDHP2-201ENST00000601468 714 ntBASIC21.28■■□□□ 1
USP9XQ93008 AP002414.2-202ENST00000590929 1450 ntBASIC21.28■■□□□ 1
USP9XQ93008 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP9XQ93008 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.27■■□□□ 1
USP9XQ93008 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.27■□□□□ 0.99
USP9XQ93008 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
USP9XQ93008 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP9XQ93008 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.26■□□□□ 0.99
USP9XQ93008 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP9XQ93008 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.26■□□□□ 0.99
USP9XQ93008 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USP9XQ93008 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP9XQ93008 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP9XQ93008 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP9XQ93008 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.25■□□□□ 0.99
USP9XQ93008 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.25■□□□□ 0.99
USP9XQ93008 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP9XQ93008 AC090192.1-201ENST00000517740 490 ntBASIC21.25■□□□□ 0.99
USP9XQ93008 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.25■□□□□ 0.99
USP9XQ93008 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP9XQ93008 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.24■□□□□ 0.99
USP9XQ93008 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.24■□□□□ 0.99
USP9XQ93008 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.24■□□□□ 0.99
USP9XQ93008 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP9XQ93008 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
USP9XQ93008 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.24■□□□□ 0.99
USP9XQ93008 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP9XQ93008 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
USP9XQ93008 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.23■□□□□ 0.99
USP9XQ93008 EDA-201ENST00000338901 1233 ntBASIC21.23■□□□□ 0.99
USP9XQ93008 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.23■□□□□ 0.99
USP9XQ93008 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP9XQ93008 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
USP9XQ93008 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP9XQ93008 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP9XQ93008 AC105265.2-201ENST00000467189 838 ntBASIC21.23■□□□□ 0.99
USP9XQ93008 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.23■□□□□ 0.99
USP9XQ93008 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.23■□□□□ 0.99
USP9XQ93008 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP9XQ93008 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.22■□□□□ 0.99
USP9XQ93008 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.22■□□□□ 0.99
USP9XQ93008 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP9XQ93008 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP9XQ93008 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
USP9XQ93008 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.21■□□□□ 0.99
USP9XQ93008 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
USP9XQ93008 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP9XQ93008 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
USP9XQ93008 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP9XQ93008 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP9XQ93008 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP9XQ93008 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP9XQ93008 AL355001.2-201ENST00000620617 1191 ntBASIC21.2■□□□□ 0.98
USP9XQ93008 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP9XQ93008 KRT18P10-201ENST00000388836 1287 ntBASIC21.19■□□□□ 0.98
USP9XQ93008 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP9XQ93008 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP9XQ93008 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP9XQ93008 AC024257.2-201ENST00000549699 147 ntBASIC21.19■□□□□ 0.98
USP9XQ93008 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP9XQ93008 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
USP9XQ93008 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP9XQ93008 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.18■□□□□ 0.98
USP9XQ93008 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP9XQ93008 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.18■□□□□ 0.98
USP9XQ93008 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.18■□□□□ 0.98
USP9XQ93008 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
USP9XQ93008 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.17■□□□□ 0.98
USP9XQ93008 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
USP9XQ93008 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.17■□□□□ 0.98
USP9XQ93008 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
USP9XQ93008 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP9XQ93008 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
USP9XQ93008 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP9XQ93008 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP9XQ93008 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP9XQ93008 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.16■□□□□ 0.98
USP9XQ93008 AF213884.3-201ENST00000563833 479 ntBASIC21.16■□□□□ 0.98
USP9XQ93008 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP9XQ93008 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.15■□□□□ 0.98
USP9XQ93008 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.15■□□□□ 0.98
USP9XQ93008 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP9XQ93008 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP9XQ93008 AC011551.1-201ENST00000614101 683 ntBASIC21.14■□□□□ 0.98
USP9XQ93008 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.14■□□□□ 0.97
USP9XQ93008 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP9XQ93008 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
USP9XQ93008 UNC93B3-201ENST00000308076 687 ntBASIC21.14■□□□□ 0.97
USP9XQ93008 MIR939-201ENST00000401314 82 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms