Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.71■■■□□ 2.51
RC3H1Q5TC82 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
RC3H1Q5TC82 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
RC3H1Q5TC82 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.7■■■□□ 2.51
RC3H1Q5TC82 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.5
RC3H1Q5TC82 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
RC3H1Q5TC82 MIR3621-201ENST00000580529 85 ntBASIC30.69■■■□□ 2.5
RC3H1Q5TC82 AL117332.1-201ENST00000622628 974 ntBASIC30.69■■■□□ 2.5
RC3H1Q5TC82 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.69■■■□□ 2.5
RC3H1Q5TC82 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
RC3H1Q5TC82 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
RC3H1Q5TC82 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.68■■■□□ 2.5
RC3H1Q5TC82 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RC3H1Q5TC82 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
RC3H1Q5TC82 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.67■■■□□ 2.5
RC3H1Q5TC82 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.67■■■□□ 2.5
RC3H1Q5TC82 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
RC3H1Q5TC82 AL136116.3-201ENST00000402907 1138 ntBASIC30.66■■■□□ 2.5
RC3H1Q5TC82 LINC01003-201ENST00000564834 1764 ntBASIC30.66■■■□□ 2.5
RC3H1Q5TC82 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
RC3H1Q5TC82 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RC3H1Q5TC82 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RC3H1Q5TC82 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.65■■■□□ 2.5
RC3H1Q5TC82 DRD5P2-201ENST00000421395 2012 ntBASIC30.65■■■□□ 2.5
RC3H1Q5TC82 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RC3H1Q5TC82 AC010997.5-201ENST00000609182 354 ntBASIC30.65■■■□□ 2.5
RC3H1Q5TC82 MIR6724-1-201ENST00000616420 92 ntBASIC30.65■■■□□ 2.5
RC3H1Q5TC82 MIR6724-2-201ENST00000616483 92 ntBASIC30.65■■■□□ 2.5
RC3H1Q5TC82 MIR6724-4-201ENST00000617390 92 ntBASIC30.65■■■□□ 2.5
RC3H1Q5TC82 MIR6724-3-201ENST00000622482 92 ntBASIC30.65■■■□□ 2.5
RC3H1Q5TC82 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
RC3H1Q5TC82 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RC3H1Q5TC82 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RC3H1Q5TC82 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.64■■■□□ 2.5
RC3H1Q5TC82 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
RC3H1Q5TC82 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
RC3H1Q5TC82 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
RC3H1Q5TC82 AC142472.1-201ENST00000612013 1741 ntBASIC30.63■■■□□ 2.49
RC3H1Q5TC82 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
RC3H1Q5TC82 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.63■■■□□ 2.49
RC3H1Q5TC82 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
RC3H1Q5TC82 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
RC3H1Q5TC82 AC110285.6-201ENST00000617652 491 ntBASIC30.62■■■□□ 2.49
RC3H1Q5TC82 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
RC3H1Q5TC82 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
RC3H1Q5TC82 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC30.59■■■□□ 2.49
RC3H1Q5TC82 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
RC3H1Q5TC82 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.58■■■□□ 2.49
RC3H1Q5TC82 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.58■■■□□ 2.49
RC3H1Q5TC82 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
RC3H1Q5TC82 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
RC3H1Q5TC82 AC011551.1-201ENST00000614101 683 ntBASIC30.57■■■□□ 2.48
RC3H1Q5TC82 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
RC3H1Q5TC82 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
RC3H1Q5TC82 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
RC3H1Q5TC82 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.56■■■□□ 2.48
RC3H1Q5TC82 MTDHP2-201ENST00000601468 714 ntBASIC30.55■■■□□ 2.48
RC3H1Q5TC82 AL356740.2-201ENST00000601559 647 ntBASIC30.55■■■□□ 2.48
RC3H1Q5TC82 AC005837.3-201ENST00000612163 286 ntBASIC30.55■■■□□ 2.48
RC3H1Q5TC82 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
RC3H1Q5TC82 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
RC3H1Q5TC82 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
RC3H1Q5TC82 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 MIR4466-201ENST00000606121 54 ntBASIC30.54■■■□□ 2.48
RC3H1Q5TC82 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
RC3H1Q5TC82 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.53■■■□□ 2.48
RC3H1Q5TC82 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.52■■■□□ 2.48
RC3H1Q5TC82 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.52■■■□□ 2.48
RC3H1Q5TC82 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.52■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms