Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
COL12A1Q99715 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL12A1Q99715 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL12A1Q99715 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL12A1Q99715 RARRES2P11-201ENST00000635158 484 ntBASIC21.47■■□□□ 1.03
COL12A1Q99715 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL12A1Q99715 KRT18P24-201ENST00000344739 1156 ntBASIC21.46■■□□□ 1.03
COL12A1Q99715 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL12A1Q99715 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL12A1Q99715 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL12A1Q99715 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL12A1Q99715 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL12A1Q99715 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.46■■□□□ 1.03
COL12A1Q99715 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.45■■□□□ 1.03
COL12A1Q99715 PBX2P1-201ENST00000493219 1291 ntBASIC21.45■■□□□ 1.02
COL12A1Q99715 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL12A1Q99715 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL12A1Q99715 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.45■■□□□ 1.02
COL12A1Q99715 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL12A1Q99715 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.45■■□□□ 1.02
COL12A1Q99715 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.45■■□□□ 1.02
COL12A1Q99715 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL12A1Q99715 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.45■■□□□ 1.02
COL12A1Q99715 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COL12A1Q99715 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL12A1Q99715 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL12A1Q99715 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL12A1Q99715 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.44■■□□□ 1.02
COL12A1Q99715 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.44■■□□□ 1.02
COL12A1Q99715 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL12A1Q99715 ABCB10P3-201ENST00000561950 2166 ntBASIC21.44■■□□□ 1.02
COL12A1Q99715 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COL12A1Q99715 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL12A1Q99715 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.43■■□□□ 1.02
COL12A1Q99715 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL12A1Q99715 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL12A1Q99715 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL12A1Q99715 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL12A1Q99715 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL12A1Q99715 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.43■■□□□ 1.02
COL12A1Q99715 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.43■■□□□ 1.02
COL12A1Q99715 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL12A1Q99715 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL12A1Q99715 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.42■■□□□ 1.02
COL12A1Q99715 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.42■■□□□ 1.02
COL12A1Q99715 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.42■■□□□ 1.02
COL12A1Q99715 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL12A1Q99715 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL12A1Q99715 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.42■■□□□ 1.02
COL12A1Q99715 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.42■■□□□ 1.02
COL12A1Q99715 MIR6724-1-201ENST00000616420 92 ntBASIC21.42■■□□□ 1.02
COL12A1Q99715 MIR6724-2-201ENST00000616483 92 ntBASIC21.42■■□□□ 1.02
COL12A1Q99715 MIR6724-4-201ENST00000617390 92 ntBASIC21.42■■□□□ 1.02
COL12A1Q99715 MIR6724-3-201ENST00000622482 92 ntBASIC21.42■■□□□ 1.02
COL12A1Q99715 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL12A1Q99715 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.41■■□□□ 1.02
COL12A1Q99715 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL12A1Q99715 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
COL12A1Q99715 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
COL12A1Q99715 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
COL12A1Q99715 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
COL12A1Q99715 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
COL12A1Q99715 ST7-AS1-201ENST00000456775 1889 ntBASIC21.4■■□□□ 1.02
COL12A1Q99715 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL12A1Q99715 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.4■■□□□ 1.02
COL12A1Q99715 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
COL12A1Q99715 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL12A1Q99715 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.4■■□□□ 1.02
COL12A1Q99715 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.4■■□□□ 1.02
COL12A1Q99715 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.39■■□□□ 1.02
COL12A1Q99715 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
COL12A1Q99715 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
COL12A1Q99715 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
COL12A1Q99715 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL12A1Q99715 AC010997.5-201ENST00000609182 354 ntBASIC21.37■■□□□ 1.01
COL12A1Q99715 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL12A1Q99715 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
COL12A1Q99715 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.37■■□□□ 1.01
COL12A1Q99715 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL12A1Q99715 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL12A1Q99715 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.36■■□□□ 1.01
COL12A1Q99715 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.36■■□□□ 1.01
COL12A1Q99715 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL12A1Q99715 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.35■■□□□ 1.01
COL12A1Q99715 AL136967.2-201ENST00000623968 743 ntBASIC21.35■■□□□ 1.01
COL12A1Q99715 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL12A1Q99715 AC105265.2-201ENST00000467189 838 ntBASIC21.35■■□□□ 1.01
COL12A1Q99715 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL12A1Q99715 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.35■■□□□ 1.01
COL12A1Q99715 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.35■■□□□ 1.01
COL12A1Q99715 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.35■■□□□ 1.01
COL12A1Q99715 AP004833.2-201ENST00000532228 1454 ntBASIC21.34■■□□□ 1.01
COL12A1Q99715 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL12A1Q99715 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.34■■□□□ 1.01
COL12A1Q99715 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.34■■□□□ 1.01
COL12A1Q99715 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.34■■□□□ 1.01
COL12A1Q99715 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.34■■□□□ 1.01
COL12A1Q99715 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL12A1Q99715 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.34■■□□□ 1.01
COL12A1Q99715 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms