Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.7■■□□□ 1.86
CCDC65Q8IXS2 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC65Q8IXS2 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
CCDC65Q8IXS2 AC026202.3-201ENST00000600805 1127 ntBASIC26.69■■□□□ 1.86
CCDC65Q8IXS2 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
CCDC65Q8IXS2 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
CCDC65Q8IXS2 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 RAP2CP1-202ENST00000605179 643 ntBASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.68■■□□□ 1.86
CCDC65Q8IXS2 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC65Q8IXS2 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
CCDC65Q8IXS2 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC65Q8IXS2 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC65Q8IXS2 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CCDC65Q8IXS2 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.67■■□□□ 1.86
CCDC65Q8IXS2 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC65Q8IXS2 RARRES2P2-201ENST00000394842 485 ntBASIC26.66■■□□□ 1.86
CCDC65Q8IXS2 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC26.66■■□□□ 1.86
CCDC65Q8IXS2 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CCDC65Q8IXS2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CCDC65Q8IXS2 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC65Q8IXS2 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC65Q8IXS2 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CCDC65Q8IXS2 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
CCDC65Q8IXS2 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.64■■□□□ 1.85
CCDC65Q8IXS2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
CCDC65Q8IXS2 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
CCDC65Q8IXS2 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CCDC65Q8IXS2 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CCDC65Q8IXS2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
CCDC65Q8IXS2 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.63■■□□□ 1.85
CCDC65Q8IXS2 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CCDC65Q8IXS2 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.62■■□□□ 1.85
CCDC65Q8IXS2 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
CCDC65Q8IXS2 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.62■■□□□ 1.85
CCDC65Q8IXS2 AC009831.1-201ENST00000580420 1582 ntBASIC26.62■■□□□ 1.85
CCDC65Q8IXS2 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.62■■□□□ 1.85
CCDC65Q8IXS2 AC133552.2-201ENST00000619106 1032 ntBASIC26.61■■□□□ 1.85
CCDC65Q8IXS2 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC65Q8IXS2 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC65Q8IXS2 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CCDC65Q8IXS2 AC020928.2-201ENST00000588717 2197 ntBASIC26.6■■□□□ 1.85
CCDC65Q8IXS2 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.6■■□□□ 1.85
CCDC65Q8IXS2 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CCDC65Q8IXS2 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.59■■□□□ 1.85
CCDC65Q8IXS2 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC65Q8IXS2 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC65Q8IXS2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CCDC65Q8IXS2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CCDC65Q8IXS2 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 AC097639.1-201ENST00000565519 1891 ntBASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CCDC65Q8IXS2 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CCDC65Q8IXS2 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.54■■□□□ 1.84
CCDC65Q8IXS2 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
CCDC65Q8IXS2 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC65Q8IXS2 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC65Q8IXS2 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC65Q8IXS2 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC65Q8IXS2 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms