Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 AC092028.1-203ENST00000608262 953 ntBASIC20.03■□□□□ 0.8
CSPG4Q6UVK1 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSPG4Q6UVK1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 AC026271.2-201ENST00000428091 497 ntBASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CSPG4Q6UVK1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CSPG4Q6UVK1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.01■□□□□ 0.79
CSPG4Q6UVK1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CSPG4Q6UVK1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CSPG4Q6UVK1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
CSPG4Q6UVK1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSPG4Q6UVK1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20■□□□□ 0.79
CSPG4Q6UVK1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20■□□□□ 0.79
CSPG4Q6UVK1 TSPY9P-201ENST00000440215 945 ntBASIC20■□□□□ 0.79
CSPG4Q6UVK1 TSPY11P-201ENST00000442607 1045 ntBASIC20■□□□□ 0.79
CSPG4Q6UVK1 SRR-208ENST00000576848 588 ntTSL 4 BASIC20■□□□□ 0.79
CSPG4Q6UVK1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CSPG4Q6UVK1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 MIR4466-201ENST00000606121 54 ntBASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CSPG4Q6UVK1 AC104564.3-201ENST00000582367 638 ntBASIC19.98■□□□□ 0.79
CSPG4Q6UVK1 ST7-205ENST00000393446 2114 ntTSL 5 BASIC19.98■□□□□ 0.79
CSPG4Q6UVK1 ZNRF2P3-201ENST00000424200 374 ntBASIC19.98■□□□□ 0.79
CSPG4Q6UVK1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 AC021242.3-201ENST00000607598 1377 ntBASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 AL136116.3-201ENST00000402907 1138 ntBASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 RARRES2P6-201ENST00000567333 442 ntBASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CSPG4Q6UVK1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CSPG4Q6UVK1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CSPG4Q6UVK1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CSPG4Q6UVK1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.95■□□□□ 0.78
CSPG4Q6UVK1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.95■□□□□ 0.78
CSPG4Q6UVK1 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CSPG4Q6UVK1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.95■□□□□ 0.78
CSPG4Q6UVK1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CSPG4Q6UVK1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 AC133561.4-201ENST00000566112 224 ntBASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 ST7-202ENST00000323984 2142 ntTSL 5 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 ST7-207ENST00000393449 2127 ntTSL 5 BASIC19.94■□□□□ 0.78
CSPG4Q6UVK1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.93■□□□□ 0.78
CSPG4Q6UVK1 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CSPG4Q6UVK1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
CSPG4Q6UVK1 AC096631.2-201ENST00000436136 790 ntBASIC19.93■□□□□ 0.78
CSPG4Q6UVK1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CSPG4Q6UVK1 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CSPG4Q6UVK1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 AC120024.1-201ENST00000562672 995 ntBASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.92■□□□□ 0.78
CSPG4Q6UVK1 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CSPG4Q6UVK1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.91■□□□□ 0.78
CSPG4Q6UVK1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.91■□□□□ 0.78
CSPG4Q6UVK1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.91■□□□□ 0.78
CSPG4Q6UVK1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms