Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM3Q53GG5 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM3Q53GG5 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.66■□□□□ 0.74
PDLIM3Q53GG5 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM3Q53GG5 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
PDLIM3Q53GG5 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PDLIM3Q53GG5 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM3Q53GG5 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
PDLIM3Q53GG5 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM3Q53GG5 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM3Q53GG5 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 AC010501.1-201ENST00000606270 1962 ntBASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 AC131212.1-201ENST00000613771 668 ntBASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM3Q53GG5 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.62■□□□□ 0.73
PDLIM3Q53GG5 KRT18P60-201ENST00000312876 1297 ntBASIC19.62■□□□□ 0.73
PDLIM3Q53GG5 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.62■□□□□ 0.73
PDLIM3Q53GG5 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PDLIM3Q53GG5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PDLIM3Q53GG5 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PDLIM3Q53GG5 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 AL451085.2-201ENST00000605085 799 ntBASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.61■□□□□ 0.73
PDLIM3Q53GG5 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.6■□□□□ 0.73
PDLIM3Q53GG5 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM3Q53GG5 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM3Q53GG5 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM3Q53GG5 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM3Q53GG5 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM3Q53GG5 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
PDLIM3Q53GG5 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PDLIM3Q53GG5 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PDLIM3Q53GG5 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
PDLIM3Q53GG5 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PDLIM3Q53GG5 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PDLIM3Q53GG5 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
PDLIM3Q53GG5 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PDLIM3Q53GG5 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.57■□□□□ 0.72
PDLIM3Q53GG5 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM3Q53GG5 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM3Q53GG5 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
PDLIM3Q53GG5 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.57■□□□□ 0.72
PDLIM3Q53GG5 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM3Q53GG5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms