Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PRKDCP78527 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PRKDCP78527 MIR6724-1-201ENST00000616420 92 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 MIR6724-2-201ENST00000616483 92 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 MIR6724-4-201ENST00000617390 92 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 MIR6724-3-201ENST00000622482 92 ntBASIC17.91■□□□□ 0.46
PRKDCP78527 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC17.91■□□□□ 0.46
PRKDCP78527 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PRKDCP78527 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PRKDCP78527 RARRES2P11-201ENST00000635158 484 ntBASIC17.9■□□□□ 0.46
PRKDCP78527 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PRKDCP78527 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKDCP78527 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PRKDCP78527 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PRKDCP78527 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PRKDCP78527 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PRKDCP78527 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.89■□□□□ 0.45
PRKDCP78527 AC105265.2-201ENST00000467189 838 ntBASIC17.89■□□□□ 0.45
PRKDCP78527 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.89■□□□□ 0.45
PRKDCP78527 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.89■□□□□ 0.45
PRKDCP78527 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.89■□□□□ 0.45
PRKDCP78527 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PRKDCP78527 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PRKDCP78527 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
PRKDCP78527 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PRKDCP78527 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PRKDCP78527 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.88■□□□□ 0.45
PRKDCP78527 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PRKDCP78527 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.88■□□□□ 0.45
PRKDCP78527 AC010997.5-201ENST00000609182 354 ntBASIC17.88■□□□□ 0.45
PRKDCP78527 AL359504.2-201ENST00000605506 1601 ntBASIC17.88■□□□□ 0.45
PRKDCP78527 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PRKDCP78527 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PRKDCP78527 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKDCP78527 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKDCP78527 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.87■□□□□ 0.45
PRKDCP78527 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.87■□□□□ 0.45
PRKDCP78527 AC120024.1-201ENST00000562672 995 ntBASIC17.87■□□□□ 0.45
PRKDCP78527 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC17.87■□□□□ 0.45
PRKDCP78527 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.87■□□□□ 0.45
PRKDCP78527 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKDCP78527 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKDCP78527 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKDCP78527 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.86■□□□□ 0.45
PRKDCP78527 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKDCP78527 SENP5-202ENST00000419026 973 ntTSL 3 BASIC17.86■□□□□ 0.45
PRKDCP78527 PBX2P1-201ENST00000493219 1291 ntBASIC17.86■□□□□ 0.45
PRKDCP78527 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PRKDCP78527 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PRKDCP78527 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC17.86■□□□□ 0.45
PRKDCP78527 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKDCP78527 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
PRKDCP78527 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
PRKDCP78527 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKDCP78527 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKDCP78527 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKDCP78527 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.85■□□□□ 0.45
PRKDCP78527 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.85■□□□□ 0.45
PRKDCP78527 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PRKDCP78527 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKDCP78527 MIR939-201ENST00000401314 82 ntBASIC17.83■□□□□ 0.45
PRKDCP78527 AC024257.2-201ENST00000549699 147 ntBASIC17.83■□□□□ 0.45
PRKDCP78527 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.83■□□□□ 0.45
PRKDCP78527 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PRKDCP78527 UNC93B3-201ENST00000308076 687 ntBASIC17.82■□□□□ 0.44
PRKDCP78527 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.82■□□□□ 0.44
PRKDCP78527 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PRKDCP78527 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PRKDCP78527 MIR4281-201ENST00000580852 62 ntBASIC17.82■□□□□ 0.44
PRKDCP78527 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PRKDCP78527 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PRKDCP78527 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PRKDCP78527 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.82■□□□□ 0.44
PRKDCP78527 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PRKDCP78527 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC17.82■□□□□ 0.44
PRKDCP78527 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PRKDCP78527 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PRKDCP78527 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PRKDCP78527 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PRKDCP78527 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PRKDCP78527 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.81■□□□□ 0.44
PRKDCP78527 AL356740.2-201ENST00000601559 647 ntBASIC17.81■□□□□ 0.44
PRKDCP78527 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.81■□□□□ 0.44
PRKDCP78527 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.81■□□□□ 0.44
PRKDCP78527 AP001330.3-201ENST00000520123 633 ntBASIC17.81■□□□□ 0.44
PRKDCP78527 MTDHP2-201ENST00000601468 714 ntBASIC17.81■□□□□ 0.44
PRKDCP78527 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.81■□□□□ 0.44
PRKDCP78527 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PRKDCP78527 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PRKDCP78527 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PRKDCP78527 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKDCP78527 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC17.8■□□□□ 0.44
PRKDCP78527 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.8■□□□□ 0.44
PRKDCP78527 AL136967.2-201ENST00000623968 743 ntBASIC17.8■□□□□ 0.44
PRKDCP78527 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKDCP78527 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.8■□□□□ 0.44
PRKDCP78527 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKDCP78527 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PRKDCP78527 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC17.79■□□□□ 0.44
PRKDCP78527 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms