Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.88■■□□□ 1.41
MSH3P20585 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH3P20585 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH3P20585 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.87■■□□□ 1.41
MSH3P20585 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
MSH3P20585 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH3P20585 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH3P20585 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH3P20585 KRT18P60-201ENST00000312876 1297 ntBASIC23.86■■□□□ 1.41
MSH3P20585 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.86■■□□□ 1.41
MSH3P20585 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH3P20585 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH3P20585 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSH3P20585 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
MSH3P20585 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.84■■□□□ 1.41
MSH3P20585 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
MSH3P20585 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSH3P20585 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MSH3P20585 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.83■■□□□ 1.41
MSH3P20585 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
MSH3P20585 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSH3P20585 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.83■■□□□ 1.4
MSH3P20585 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.82■■□□□ 1.4
MSH3P20585 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.82■■□□□ 1.4
MSH3P20585 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MSH3P20585 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MSH3P20585 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
MSH3P20585 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSH3P20585 ERN1-208ENST00000606895 2068 ntBASIC23.82■■□□□ 1.4
MSH3P20585 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.82■■□□□ 1.4
MSH3P20585 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 DUSP8P4-201ENST00000399538 1761 ntBASIC23.81■■□□□ 1.4
MSH3P20585 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH3P20585 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
MSH3P20585 AC129492.7-201ENST00000622992 756 ntBASIC23.81■■□□□ 1.4
MSH3P20585 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSH3P20585 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH3P20585 AC018755.3-202ENST00000596210 929 ntBASIC23.8■■□□□ 1.4
MSH3P20585 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH3P20585 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH3P20585 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH3P20585 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH3P20585 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
MSH3P20585 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
MSH3P20585 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
MSH3P20585 AC010501.1-201ENST00000606270 1962 ntBASIC23.78■■□□□ 1.4
MSH3P20585 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
MSH3P20585 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 DUX4L9-201ENST00000449051 1259 ntBASIC23.78■■□□□ 1.4
MSH3P20585 SPCS2P3-201ENST00000500401 656 ntBASIC23.78■■□□□ 1.4
MSH3P20585 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH3P20585 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH3P20585 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH3P20585 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
MSH3P20585 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 AC135731.1-201ENST00000569415 2548 ntBASIC23.76■■□□□ 1.39
MSH3P20585 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH3P20585 AC012354.3-201ENST00000623734 483 ntBASIC23.76■■□□□ 1.39
MSH3P20585 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH3P20585 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH3P20585 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH3P20585 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH3P20585 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH3P20585 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.75■■□□□ 1.39
MSH3P20585 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 MIR6765-201ENST00000614092 87 ntBASIC23.75■■□□□ 1.39
MSH3P20585 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH3P20585 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
MSH3P20585 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH3P20585 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH3P20585 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
MSH3P20585 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms