Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC31.27■■■□□ 2.6
PTCD1O75127 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.26■■■□□ 2.6
PTCD1O75127 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.6
PTCD1O75127 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.26■■■□□ 2.59
PTCD1O75127 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.26■■■□□ 2.59
PTCD1O75127 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.26■■■□□ 2.59
PTCD1O75127 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.26■■■□□ 2.59
PTCD1O75127 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.26■■■□□ 2.59
PTCD1O75127 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
PTCD1O75127 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
PTCD1O75127 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.25■■■□□ 2.59
PTCD1O75127 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
PTCD1O75127 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
PTCD1O75127 GRAMD4P7-201ENST00000578182 1232 ntBASIC31.25■■■□□ 2.59
PTCD1O75127 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
PTCD1O75127 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
PTCD1O75127 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
PTCD1O75127 BX255925.1-201ENST00000566954 1854 ntBASIC31.24■■■□□ 2.59
PTCD1O75127 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
PTCD1O75127 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
PTCD1O75127 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.23■■■□□ 2.59
PTCD1O75127 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.23■■■□□ 2.59
PTCD1O75127 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
PTCD1O75127 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
PTCD1O75127 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
PTCD1O75127 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.23■■■□□ 2.59
PTCD1O75127 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.22■■■□□ 2.59
PTCD1O75127 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
PTCD1O75127 MIR4787-201ENST00000607364 84 ntBASIC31.22■■■□□ 2.59
PTCD1O75127 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
PTCD1O75127 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
PTCD1O75127 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
PTCD1O75127 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.21■■■□□ 2.59
PTCD1O75127 KRT125P-201ENST00000546827 989 ntBASIC31.21■■■□□ 2.59
PTCD1O75127 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
PTCD1O75127 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC31.21■■■□□ 2.59
PTCD1O75127 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.59
PTCD1O75127 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
PTCD1O75127 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
PTCD1O75127 AC022616.5-201ENST00000518796 181 ntBASIC31.19■■■□□ 2.58
PTCD1O75127 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
PTCD1O75127 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
PTCD1O75127 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PTCD1O75127 KRT18P10-201ENST00000388836 1287 ntBASIC31.18■■■□□ 2.58
PTCD1O75127 BX664725.1-201ENST00000438252 379 ntBASIC31.18■■■□□ 2.58
PTCD1O75127 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC31.18■■■□□ 2.58
PTCD1O75127 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
PTCD1O75127 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PTCD1O75127 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PTCD1O75127 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC31.17■■■□□ 2.58
PTCD1O75127 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.17■■■□□ 2.58
PTCD1O75127 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
PTCD1O75127 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC31.16■■■□□ 2.58
PTCD1O75127 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC31.16■■■□□ 2.58
PTCD1O75127 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PTCD1O75127 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PTCD1O75127 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.15■■■□□ 2.58
PTCD1O75127 KRT18P24-201ENST00000344739 1156 ntBASIC31.15■■■□□ 2.58
PTCD1O75127 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PTCD1O75127 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.15■■■□□ 2.58
PTCD1O75127 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.15■■■□□ 2.58
PTCD1O75127 UNC93B8-201ENST00000511903 705 ntBASIC31.15■■■□□ 2.58
PTCD1O75127 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.14■■■□□ 2.58
PTCD1O75127 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
PTCD1O75127 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PTCD1O75127 AC008406.3-201ENST00000620001 1374 ntBASIC31.13■■■□□ 2.57
PTCD1O75127 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PTCD1O75127 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
PTCD1O75127 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
PTCD1O75127 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.12■■■□□ 2.57
PTCD1O75127 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.12■■■□□ 2.57
PTCD1O75127 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PTCD1O75127 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PTCD1O75127 AC142472.1-201ENST00000612013 1741 ntBASIC31.11■■■□□ 2.57
PTCD1O75127 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.11■■■□□ 2.57
PTCD1O75127 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.1■■■□□ 2.57
PTCD1O75127 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
PTCD1O75127 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PTCD1O75127 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC31.1■■■□□ 2.57
PTCD1O75127 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC31.1■■■□□ 2.57
PTCD1O75127 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
PTCD1O75127 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PTCD1O75127 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
PTCD1O75127 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PTCD1O75127 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.09■■■□□ 2.57
PTCD1O75127 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PTCD1O75127 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.09■■■□□ 2.57
PTCD1O75127 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PTCD1O75127 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC31.09■■■□□ 2.57
PTCD1O75127 AC120024.1-201ENST00000562672 995 ntBASIC31.09■■■□□ 2.57
PTCD1O75127 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.09■■■□□ 2.57
PTCD1O75127 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
PTCD1O75127 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC31.08■■■□□ 2.57
PTCD1O75127 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PTCD1O75127 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PTCD1O75127 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
PTCD1O75127 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PTCD1O75127 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
PTCD1O75127 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.07■■■□□ 2.56
PTCD1O75127 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms