Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.8■■□□□ 1.72
FOXN3O00409 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.79■■□□□ 1.72
FOXN3O00409 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.79■■□□□ 1.72
FOXN3O00409 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
FOXN3O00409 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.79■■□□□ 1.72
FOXN3O00409 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
FOXN3O00409 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
FOXN3O00409 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.79■■□□□ 1.72
FOXN3O00409 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.78■■□□□ 1.72
FOXN3O00409 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
FOXN3O00409 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
FOXN3O00409 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.78■■□□□ 1.72
FOXN3O00409 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
FOXN3O00409 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
FOXN3O00409 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.77■■□□□ 1.72
FOXN3O00409 RP9P-202ENST00000450133 1212 ntBASIC25.77■■□□□ 1.72
FOXN3O00409 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.77■■□□□ 1.72
FOXN3O00409 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
FOXN3O00409 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
FOXN3O00409 AC135731.1-201ENST00000569415 2548 ntBASIC25.77■■□□□ 1.72
FOXN3O00409 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
FOXN3O00409 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
FOXN3O00409 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.76■■□□□ 1.72
FOXN3O00409 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
FOXN3O00409 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.76■■□□□ 1.71
FOXN3O00409 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.76■■□□□ 1.71
FOXN3O00409 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
FOXN3O00409 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
FOXN3O00409 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
FOXN3O00409 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
FOXN3O00409 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC25.75■■□□□ 1.71
FOXN3O00409 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
FOXN3O00409 AC093536.1-201ENST00000569153 554 ntBASIC25.75■■□□□ 1.71
FOXN3O00409 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.75■■□□□ 1.71
FOXN3O00409 AC007029.1-201ENST00000604183 313 ntBASIC25.75■■□□□ 1.71
FOXN3O00409 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
FOXN3O00409 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
FOXN3O00409 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
FOXN3O00409 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
FOXN3O00409 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.74■■□□□ 1.71
FOXN3O00409 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.74■■□□□ 1.71
FOXN3O00409 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
FOXN3O00409 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
FOXN3O00409 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.74■■□□□ 1.71
FOXN3O00409 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
FOXN3O00409 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
FOXN3O00409 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
FOXN3O00409 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.73■■□□□ 1.71
FOXN3O00409 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
FOXN3O00409 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.73■■□□□ 1.71
FOXN3O00409 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
FOXN3O00409 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.72■■□□□ 1.71
FOXN3O00409 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
FOXN3O00409 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC25.72■■□□□ 1.71
FOXN3O00409 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.71■■□□□ 1.71
FOXN3O00409 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
FOXN3O00409 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
FOXN3O00409 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25.7■■□□□ 1.7
FOXN3O00409 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
FOXN3O00409 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
FOXN3O00409 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.7■■□□□ 1.7
FOXN3O00409 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC25.7■■□□□ 1.7
FOXN3O00409 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
FOXN3O00409 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.69■■□□□ 1.7
FOXN3O00409 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC25.69■■□□□ 1.7
FOXN3O00409 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
FOXN3O00409 AC097639.1-201ENST00000565519 1891 ntBASIC25.68■■□□□ 1.7
FOXN3O00409 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
FOXN3O00409 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
FOXN3O00409 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
FOXN3O00409 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
FOXN3O00409 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
FOXN3O00409 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
FOXN3O00409 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
FOXN3O00409 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
FOXN3O00409 GFER-205ENST00000569451 517 ntTSL 5 BASIC25.67■■□□□ 1.7
FOXN3O00409 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.67■■□□□ 1.7
FOXN3O00409 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC25.67■■□□□ 1.7
FOXN3O00409 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
FOXN3O00409 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
FOXN3O00409 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
FOXN3O00409 AC022211.4-201ENST00000625094 2161 ntBASIC25.66■■□□□ 1.7
FOXN3O00409 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.66■■□□□ 1.7
FOXN3O00409 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
FOXN3O00409 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
FOXN3O00409 RAP2CP1-202ENST00000605179 643 ntBASIC25.66■■□□□ 1.7
FOXN3O00409 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
FOXN3O00409 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
FOXN3O00409 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.66■■□□□ 1.7
FOXN3O00409 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
FOXN3O00409 RNF126P1-201ENST00000567452 1320 ntBASIC25.65■■□□□ 1.7
FOXN3O00409 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
FOXN3O00409 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.65■■□□□ 1.7
FOXN3O00409 AC026202.3-201ENST00000600805 1127 ntBASIC25.65■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms