Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SFPQ-202ENST00000460428 464 ntTSL 29.28□□□□□ -0.922e-13■□□□□ 9.3
UPF1Q92900 SFPQ-205ENST00000468598 2835 ntTSL 1 (best)8.33□□□□□ -1.082e-13■□□□□ 9.3
UPF1Q92900 SFPQ-206ENST00000470472 874 ntTSL 57.71□□□□□ -1.182e-13■□□□□ 9.3
UPF1Q92900 SFPQ-210ENST00000490668 434 ntTSL 26.1□□□□□ -1.432e-13■□□□□ 9.3
UPF1Q92900 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.161e-6■□□□□ 9.3
UPF1Q92900 EHD2-203ENST00000540884 1215 ntTSL 225.36■■□□□ 1.656e-8■□□□□ 9.3
UPF1Q92900 PRRC2B-205ENST00000451855 1762 ntTSL 527.2■■□□□ 1.947e-7■□□□□ 9.3
UPF1Q92900 ARL8B-206ENST00000468010 452 ntTSL 58.16□□□□□ -1.16e-11■□□□□ 9.3
UPF1Q92900 MLXIP-210ENST00000541750 2835 ntTSL 513.72□□□□□ -0.214e-7■□□□□ 9.3
UPF1Q92900 MKNK2-205ENST00000586828 1503 ntTSL 225.65■■□□□ 1.72e-6■□□□□ 9.3
UPF1Q92900 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.542e-6■□□□□ 9.3
UPF1Q92900 HLF-208ENST00000573945 2977 ntTSL 5 BASIC9.69□□□□□ -0.862e-6■□□□□ 9.3
UPF1Q92900 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.24□□□□□ -1.252e-6■□□□□ 9.3
UPF1Q92900 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.735e-22■□□□□ 9.3
UPF1Q92900 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.895e-22■□□□□ 9.3
UPF1Q92900 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.893e-11■□□□□ 9.3
UPF1Q92900 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.9■□□□□ 0.783e-11■□□□□ 9.3
UPF1Q92900 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.43e-11■□□□□ 9.3
UPF1Q92900 CD55-211ENST00000635614 1145 ntTSL 514.7□□□□□ -0.063e-11■□□□□ 9.3
UPF1Q92900 CD55-210ENST00000634386 951 ntTSL 513.67□□□□□ -0.223e-11■□□□□ 9.3
UPF1Q92900 CD55-208ENST00000476590 2163 ntTSL 1 (best)4.89□□□□□ -1.633e-11■□□□□ 9.3
UPF1Q92900 FLOT1-202ENST00000413165 856 ntTSL 528.9■■■□□ 2.225e-7■□□□□ 9.3
UPF1Q92900 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.825e-7■□□□□ 9.3
UPF1Q92900 FLOT1-212ENST00000487376 1583 ntTSL 523.35■■□□□ 1.335e-7■□□□□ 9.3
UPF1Q92900 FLOT1-209ENST00000476729 562 ntTSL 222.84■■□□□ 1.255e-7■□□□□ 9.3
UPF1Q92900 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.025e-7■□□□□ 9.3
UPF1Q92900 RNF10-220ENST00000543757 315 ntTSL 56.5□□□□□ -1.375e-7■□□□□ 9.3
UPF1Q92900 COTL1-202ENST00000561707 781 ntTSL 1 (best)16.08■□□□□ 0.164e-32■□□□□ 9.2
UPF1Q92900 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.249e-7■□□□□ 9.2
UPF1Q92900 CTSD-202ENST00000367196 907 ntTSL 521.69■■□□□ 1.064e-22■□□□□ 9.2
UPF1Q92900 R3HDM4-206ENST00000590454 1006 ntTSL 331.76■■■□□ 2.671e-14■□□□□ 9.2
UPF1Q92900 R3HDM4-202ENST00000586080 537 ntTSL 430.15■■■□□ 2.421e-14■□□□□ 9.2
UPF1Q92900 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.651e-14■□□□□ 9.2
UPF1Q92900 R3HDM4-207ENST00000591829 823 ntTSL 518.11■□□□□ 0.491e-14■□□□□ 9.2
UPF1Q92900 RAC2-204ENST00000406508 893 ntTSL 5 BASIC23.72■■□□□ 1.392e-9■□□□□ 9.2
UPF1Q92900 RPA1-206ENST00000573994 844 ntTSL 214.26□□□□□ -0.131e-10■□□□□ 9.2
UPF1Q92900 MLXIP-211ENST00000542417 513 ntTSL 219.17■□□□□ 0.661e-6■□□□□ 9.2
UPF1Q92900 MLXIP-202ENST00000366272 1682 ntTSL 319.09■□□□□ 0.651e-6■□□□□ 9.2
UPF1Q92900 RNF10-211ENST00000538254 661 ntTSL 312.1□□□□□ -0.471e-6■□□□□ 9.2
UPF1Q92900 RNF10-206ENST00000535470 760 ntTSL 311.7□□□□□ -0.541e-6■□□□□ 9.2
UPF1Q92900 RNF10-222ENST00000544805 536 ntTSL 211.42□□□□□ -0.581e-6■□□□□ 9.2
UPF1Q92900 RNF10-217ENST00000542701 1388 ntTSL 511.34□□□□□ -0.591e-6■□□□□ 9.2
UPF1Q92900 SDHD-211ENST00000525987 968 ntTSL 418.52■□□□□ 0.561e-6■□□□□ 9.2
UPF1Q92900 SDHD-212ENST00000531744 566 ntTSL 218.52■□□□□ 0.561e-6■□□□□ 9.2
UPF1Q92900 SDHD-213ENST00000532699 571 ntTSL 318.52■□□□□ 0.561e-6■□□□□ 9.2
UPF1Q92900 SDHD-204ENST00000528021 1071 ntTSL 3 BASIC16.75■□□□□ 0.271e-6■□□□□ 9.2
UPF1Q92900 SDHD-208ENST00000534010 460 ntTSL 215.55■□□□□ 0.081e-6■□□□□ 9.2
UPF1Q92900 SDHD-201ENST00000375549 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.061e-6■□□□□ 9.2
UPF1Q92900 CIC-209ENST00000576505 1304 ntTSL 325.88■■□□□ 1.733e-8■□□□□ 9.2
UPF1Q92900 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.56■■□□□ 1.523e-8■□□□□ 9.2
UPF1Q92900 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.063e-8■□□□□ 9.2
UPF1Q92900 CIC-204ENST00000572681 8218 ntTSL 5 BASIC12.43□□□□□ -0.423e-8■□□□□ 9.2
UPF1Q92900 EIF1-207ENST00000591776 797 ntTSL 4 BASIC10.19□□□□□ -0.785e-32■□□□□ 9.2
UPF1Q92900 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC12.79□□□□□ -0.369e-20■□□□□ 9.2
UPF1Q92900 SELENOP-214ENST00000514985 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.559e-20■□□□□ 9.2
UPF1Q92900 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.589e-20■□□□□ 9.2
UPF1Q92900 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.879e-20■□□□□ 9.2
UPF1Q92900 SELENOP-210ENST00000512980 4175 ntTSL 26.66□□□□□ -1.349e-20■□□□□ 9.2
UPF1Q92900 CENPA-204ENST00000460030 745 ntTSL 1 (best)26.39■■□□□ 1.821e-6■□□□□ 9.2
UPF1Q92900 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.496e-16■□□□□ 9.2
UPF1Q92900 LETM1-204ENST00000510940 563 ntTSL 217.23■□□□□ 0.351e-6■□□□□ 9.2
UPF1Q92900 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.58■□□□□ 0.251e-6■□□□□ 9.2
UPF1Q92900 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.49■□□□□ 0.231e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-206ENST00000437553 1686 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.091e-6■□□□□ 9.2
UPF1Q92900 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.071e-6■□□□□ 9.2
UPF1Q92900 ASH2L-208ENST00000521808 613 ntTSL 515.16■□□□□ 0.021e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-216ENST00000557665 1331 ntTSL 514.98□□□□□ -0.011e-6■□□□□ 9.2
UPF1Q92900 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.081e-6■□□□□ 9.2
UPF1Q92900 PPP2R5C-203ENST00000350249 3845 ntTSL 1 (best) BASIC13.98□□□□□ -0.171e-6■□□□□ 9.2
UPF1Q92900 ASH2L-206ENST00000520079 2119 ntTSL 213.42□□□□□ -0.261e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-205ENST00000398169 1631 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.261e-6■□□□□ 9.2
UPF1Q92900 VTA1-203ENST00000452973 3177 ntTSL 2 BASIC12.8□□□□□ -0.361e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-204ENST00000398163 1604 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.371e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-203ENST00000398160 1613 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.441e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-201ENST00000353689 1305 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.591e-6■□□□□ 9.2
UPF1Q92900 PPP2R5C-201ENST00000328724 4045 ntTSL 2 BASIC11.37□□□□□ -0.591e-6■□□□□ 9.2
UPF1Q92900 VTA1-205ENST00000620996 3272 ntTSL 3 BASIC11.14□□□□□ -0.631e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-202ENST00000358932 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.651e-6■□□□□ 9.2
UPF1Q92900 PRCP-213ENST00000532709 2521 ntTSL 210.79□□□□□ -0.681e-6■□□□□ 9.2
UPF1Q92900 DLD-201ENST00000205402 3755 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.721e-6■□□□□ 9.2
UPF1Q92900 ASH2L-202ENST00000428278 2678 ntTSL 1 (best) BASIC10.47□□□□□ -0.731e-6■□□□□ 9.2
UPF1Q92900 PPP2R5C-202ENST00000334743 4328 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.751e-6■□□□□ 9.2
UPF1Q92900 ASH2L-207ENST00000521652 2433 ntTSL 1 (best) BASIC10.36□□□□□ -0.751e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-214ENST00000556854 1294 ntTSL 510.02□□□□□ -0.811e-6■□□□□ 9.2
UPF1Q92900 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.871e-6■□□□□ 9.2
UPF1Q92900 PRCP-202ENST00000393399 2120 ntTSL 2 BASIC9.38□□□□□ -0.911e-6■□□□□ 9.2
UPF1Q92900 CCNB1IP1-210ENST00000554184 513 ntTSL 38.82□□□□□ -11e-6■□□□□ 9.2
UPF1Q92900 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.251e-6■□□□□ 9.2
UPF1Q92900 DLD-203ENST00000417551 2041 ntTSL 56.47□□□□□ -1.371e-6■□□□□ 9.2
UPF1Q92900 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.561e-6■□□□□ 9.2
UPF1Q92900 PRCP-219ENST00000623464 7072 nt4.29□□□□□ -1.721e-6■□□□□ 9.2
UPF1Q92900 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.239e-11■□□□□ 9.2
UPF1Q92900 CANX-218ENST00000514032 1876 ntTSL 223.8■■□□□ 1.44e-21■□□□□ 9.1
UPF1Q92900 CANX-209ENST00000504734 2232 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.074e-21■□□□□ 9.1
UPF1Q92900 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.893e-8■□□□□ 9.1
UPF1Q92900 MDM4-209ENST00000463049 6102 ntTSL 510.62□□□□□ -0.711e-7■□□□□ 9.1
UPF1Q92900 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC7.83□□□□□ -1.161e-7■□□□□ 9.1
UPF1Q92900 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.74□□□□□ -1.171e-7■□□□□ 9.1
UPF1Q92900 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC7.39□□□□□ -1.231e-7■□□□□ 9.1
UPF1Q92900 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC7.22□□□□□ -1.251e-7■□□□□ 9.1
Retrieved 100 of 15,879 protein–RNA pairs in 527 ms