RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
VTA1-205ENST00000620996 CCDC180Q9P1Z9 1646 aa18.59■□□□□ 0.57
VTA1-205ENST00000620996 DCAF8L2P0C7V8 631 aa18.32■□□□□ 0.52
VTA1-205ENST00000620996 SHROOM4Q9ULL8 1493 aa18.22■□□□□ 0.51
VTA1-205ENST00000620996 ZCCHC6Q5VYS8 1495 aaKnown RBP18.16■□□□□ 0.5
VTA1-205ENST00000620996 ABCC9O60706 1549 aa17.79■□□□□ 0.44
VTA1-205ENST00000620996 DCAF1Q9Y4B6 1507 aa17.68■□□□□ 0.42
VTA1-205ENST00000620996 SUPT5HO00267 1087 aaKnown RBP17.64■□□□□ 0.41
VTA1-205ENST00000620996 SCRIBQ14160 1630 aa17.44■□□□□ 0.38
VTA1-205ENST00000620996 MYO15BQ96JP2 1530 aa17.35■□□□□ 0.37
VTA1-205ENST00000620996 NACADO15069 1562 aa17.34■□□□□ 0.37
VTA1-205ENST00000620996 RB1CC1Q8TDY2 1594 aa17.21■□□□□ 0.35
VTA1-205ENST00000620996 PABPN1Q86U42 306 aaKnown RBP eCLIP16.94■□□□□ 0.3
VTA1-205ENST00000620996 RSF1Q96T23 1441 aaPredicted RBP16.91■□□□□ 0.3
VTA1-205ENST00000620996 CECR2Q9BXF3 1484 aa16.9■□□□□ 0.3
VTA1-205ENST00000620996 UNC13AQ9UPW8 1703 aa16.82■□□□□ 0.28
VTA1-205ENST00000620996 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
VTA1-205ENST00000620996 MROH2BQ7Z745 1585 aa16.78■□□□□ 0.28
VTA1-205ENST00000620996 WIZO95785 1651 aa16.67■□□□□ 0.26
VTA1-205ENST00000620996 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
VTA1-205ENST00000620996 BICRAQ9NZM4 1560 aa16.66■□□□□ 0.26
VTA1-205ENST00000620996 SMARCA4P51532 1647 aa16.57■□□□□ 0.24
VTA1-205ENST00000620996 TRIM41Q8WV44 630 aa16.46■□□□□ 0.22
VTA1-205ENST00000620996 TOP2AP11388 1531 aaKnown RBP16.41■□□□□ 0.22
VTA1-205ENST00000620996 FAM9AQ8IZU1 332 aaPredicted RBP16.35■□□□□ 0.21
VTA1-205ENST00000620996 CCDC88BA6NC98 1476 aa16.33■□□□□ 0.21
VTA1-205ENST00000620996 LOC105371045A0A1W2PR82 267 aa16.31■□□□□ 0.2
VTA1-205ENST00000620996 EHMT2Q96KQ7 1210 aa16.29■□□□□ 0.2
VTA1-205ENST00000620996 ATAD2BQ9ULI0 1458 aa16.28■□□□□ 0.2
VTA1-205ENST00000620996 SMARCA2P51531 1590 aa16.28■□□□□ 0.2
VTA1-205ENST00000620996 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.2
VTA1-205ENST00000620996 EIF4G1Q04637 1599 aaKnown RBP16.21■□□□□ 0.18
VTA1-205ENST00000620996 PEG3Q9GZU2 1588 aa16.21■□□□□ 0.18
VTA1-205ENST00000620996 ABCC8Q09428 1581 aa16.15■□□□□ 0.18
VTA1-205ENST00000620996 NCAPD3P42695 1498 aa16.04■□□□□ 0.16
VTA1-205ENST00000620996 HMGXB3Q12766 1538 aa15.99■□□□□ 0.15
VTA1-205ENST00000620996 WRNQ14191 1432 aaPredicted RBP eCLIP15.96■□□□□ 0.15
VTA1-205ENST00000620996 CC2D2AQ9P2K1 1620 aa15.95■□□□□ 0.14
VTA1-205ENST00000620996 SOGA1O94964 1423 aa15.89■□□□□ 0.13
VTA1-205ENST00000620996 SYNJ1O43426 1573 aa15.84■□□□□ 0.13
VTA1-205ENST00000620996 PCGF6Q9BYE7 350 aa15.83■□□□□ 0.12
VTA1-205ENST00000620996 RUSC2Q8N2Y8 1516 aa15.82■□□□□ 0.12
VTA1-205ENST00000620996 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
VTA1-205ENST00000620996 UBTFP17480 764 aaKnown RBP15.79■□□□□ 0.12
VTA1-205ENST00000620996 CFTRP13569 1480 aa15.77■□□□□ 0.12
VTA1-205ENST00000620996 CADPSQ9ULU8 1353 aa15.74■□□□□ 0.11
VTA1-205ENST00000620996 EEA1Q15075 1411 aa15.72■□□□□ 0.11
VTA1-205ENST00000620996 PPARGC1BQ86YN6 1023 aaKnown RBP15.7■□□□□ 0.1
VTA1-205ENST00000620996 RANGAP1P46060 587 aaPredicted RBP15.69■□□□□ 0.1
VTA1-205ENST00000620996 DNAJC5BQ9UF47 199 aa15.69■□□□□ 0.1
VTA1-205ENST00000620996 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
VTA1-205ENST00000620996 CUX1P39880 1505 aa15.66■□□□□ 0.1
VTA1-205ENST00000620996 NESP48681 1621 aa15.64■□□□□ 0.09
VTA1-205ENST00000620996 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
VTA1-205ENST00000620996 TTBK1Q5TCY1 1321 aaPredicted RBP15.62■□□□□ 0.09
VTA1-205ENST00000620996 BIVM-ERCC5R4GMW8 1640 aa15.61■□□□□ 0.09
VTA1-205ENST00000620996 FANCD2Q9BXW9 1451 aa15.6■□□□□ 0.09
VTA1-205ENST00000620996 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
VTA1-205ENST00000620996 CEP162Q5TB80 1403 aa15.6■□□□□ 0.09
VTA1-205ENST00000620996 CEP164Q9UPV0 1460 aa15.58■□□□□ 0.08
VTA1-205ENST00000620996 TNIKQ9UKE5 1360 aa15.58■□□□□ 0.08
VTA1-205ENST00000620996 PRDM2Q13029 1718 aa15.56■□□□□ 0.08
VTA1-205ENST00000620996 KIF27Q86VH2 1401 aa15.54■□□□□ 0.08
VTA1-205ENST00000620996 RAPGEF2Q9Y4G8 1499 aa15.53■□□□□ 0.08
VTA1-205ENST00000620996 FGD5Q6ZNL6 1462 aa15.51■□□□□ 0.07
VTA1-205ENST00000620996 CUX2O14529 1486 aa15.5■□□□□ 0.07
VTA1-205ENST00000620996 KIF21BO75037 1637 aa15.49■□□□□ 0.07
VTA1-205ENST00000620996 LAMC3Q9Y6N6 1575 aa15.46■□□□□ 0.06
VTA1-205ENST00000620996 CLIP1P30622 1438 aa15.45■□□□□ 0.06
VTA1-205ENST00000620996 PDS5BQ9NTI5 1447 aa15.45■□□□□ 0.06
VTA1-205ENST00000620996 RAD54L2Q9Y4B4 1467 aa15.42■□□□□ 0.06
VTA1-205ENST00000620996 TOPBP1Q92547 1522 aa15.42■□□□□ 0.06
VTA1-205ENST00000620996 DNMBPQ6XZF7 1577 aa15.4■□□□□ 0.06
VTA1-205ENST00000620996 PRXQ9BXM0 1461 aa15.39■□□□□ 0.05
VTA1-205ENST00000620996 HRCP23327 699 aa15.39■□□□□ 0.05
VTA1-205ENST00000620996 POLA1P09884 1462 aaPredicted RBP15.37■□□□□ 0.05
VTA1-205ENST00000620996 APLP2Q06481 763 aa15.37■□□□□ 0.05
VTA1-205ENST00000620996 URB2Q14146 1524 aaKnown RBP15.36■□□□□ 0.05
VTA1-205ENST00000620996 IGF1RP08069 1367 aa15.36■□□□□ 0.05
VTA1-205ENST00000620996 ERICH3Q5RHP9 1530 aa15.34■□□□□ 0.05
VTA1-205ENST00000620996 CARMIL1Q5VZK9 1371 aa15.34■□□□□ 0.05
VTA1-205ENST00000620996 KIF21AQ7Z4S6 1674 aa15.33■□□□□ 0.04
VTA1-205ENST00000620996 TDRD9Q8NDG6 1382 aaKnown RBP15.31■□□□□ 0.04
VTA1-205ENST00000620996 ABCA10Q8WWZ4 1543 aa15.27■□□□□ 0.04
VTA1-205ENST00000620996 VPS8Q8N3P4 1428 aa15.27■□□□□ 0.03
VTA1-205ENST00000620996 PELP1Q8IZL8 1130 aaKnown RBP15.27■□□□□ 0.03
VTA1-205ENST00000620996 ERCC6Q03468 1493 aa15.24■□□□□ 0.03
VTA1-205ENST00000620996 P3H3Q8IVL6 736 aa15.24■□□□□ 0.03
VTA1-205ENST00000620996 MRC2Q9UBG0 1479 aa15.21■□□□□ 0.03
VTA1-205ENST00000620996 ATP1B4Q9UN42 357 aaPredicted RBP15.2■□□□□ 0.02
VTA1-205ENST00000620996 GAPVD1Q14C86 1478 aa15.19■□□□□ 0.02
VTA1-205ENST00000620996 ARAP1Q96P48 1450 aa15.18■□□□□ 0.02
VTA1-205ENST00000620996 ARHGAP35Q9NRY4 1499 aa15.15■□□□□ 0.02
VTA1-205ENST00000620996 AQRO60306 1485 aaKnown RBP eCLIP15.14■□□□□ 0.01
VTA1-205ENST00000620996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.14■□□□□ 0.01
VTA1-205ENST00000620996 HNRNPUL2Q1KMD3 747 aaKnown RBP15.12■□□□□ 0.01
VTA1-205ENST00000620996 WDR97A6NE52 1622 aa15.11■□□□□ 0.01
VTA1-205ENST00000620996 CCER1Q8TC90 406 aaPredicted RBP15.11■□□□□ 0.01
VTA1-205ENST00000620996 CUL7Q14999 1698 aa15.1■□□□□ 0.01
VTA1-205ENST00000620996 ABCA5Q8WWZ7 1642 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms