RNA–Protein interactions for RNA: ENST00000573994.1

RPA1-206, Transcript of replication protein A1, humanhuman

TSL 2

Gene RPA1, Length 844 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-206ENST00000573994 AEBP2Q6ZN18 517 aaPredicted RBP26.79■■□□□ 1.88
RPA1-206ENST00000573994 CHIC1Q5VXU3 224 aa25.76■■□□□ 1.71
RPA1-206ENST00000573994 NISCHQ9Y2I1 1504 aa24.64■■□□□ 1.53
RPA1-206ENST00000573994 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
RPA1-206ENST00000573994 PHF23Q9BUL5 403 aaPredicted RBP22.69■■□□□ 1.22
RPA1-206ENST00000573994 CCDC180Q9P1Z9 1646 aa21.96■■□□□ 1.11
RPA1-206ENST00000573994 ABCC9O60706 1549 aa21.81■■□□□ 1.08
RPA1-206ENST00000573994 FOXD1Q16676 465 aa21.33■■□□□ 1.01
RPA1-206ENST00000573994 RB1CC1Q8TDY2 1594 aa20.8■□□□□ 0.92
RPA1-206ENST00000573994 PLPPR3Q6T4P5 718 aa20.77■□□□□ 0.92
RPA1-206ENST00000573994 DCAF8L2P0C7V8 631 aa20.71■□□□□ 0.91
RPA1-206ENST00000573994 NACADO15069 1562 aa20.71■□□□□ 0.91
RPA1-206ENST00000573994 ZCCHC6Q5VYS8 1495 aaKnown RBP20.5■□□□□ 0.87
RPA1-206ENST00000573994 MYO15BQ96JP2 1530 aa20.48■□□□□ 0.87
RPA1-206ENST00000573994 PABPN1Q86U42 306 aaKnown RBP eCLIP20.34■□□□□ 0.85
RPA1-206ENST00000573994 DCAF1Q9Y4B6 1507 aa20.32■□□□□ 0.84
RPA1-206ENST00000573994 UNC13AQ9UPW8 1703 aa20.29■□□□□ 0.84
RPA1-206ENST00000573994 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
RPA1-206ENST00000573994 DNAJC5BQ9UF47 199 aa20.19■□□□□ 0.82
RPA1-206ENST00000573994 SCRIBQ14160 1630 aa20.13■□□□□ 0.81
RPA1-206ENST00000573994 MSH5O43196 834 aa20.11■□□□□ 0.81
RPA1-206ENST00000573994 PIAS4Q8N2W9 510 aaPredicted RBP20.08■□□□□ 0.81
RPA1-206ENST00000573994 ADRA2BP18089 450 aa19.98■□□□□ 0.79
RPA1-206ENST00000573994 PPP6R1Q9UPN7 881 aa19.97■□□□□ 0.79
RPA1-206ENST00000573994 SHROOM4Q9ULL8 1493 aa19.92■□□□□ 0.78
RPA1-206ENST00000573994 EIF4G1Q04637 1599 aaKnown RBP19.7■□□□□ 0.74
RPA1-206ENST00000573994 CC2D2AQ9P2K1 1620 aa19.67■□□□□ 0.74
RPA1-206ENST00000573994 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
RPA1-206ENST00000573994 SMARCA4P51532 1647 aa19.18■□□□□ 0.66
RPA1-206ENST00000573994 POTEDQ86YR6 584 aa19.15■□□□□ 0.66
RPA1-206ENST00000573994 ATAD2BQ9ULI0 1458 aa19.13■□□□□ 0.65
RPA1-206ENST00000573994 NCAPD3P42695 1498 aa19.11■□□□□ 0.65
RPA1-206ENST00000573994 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
RPA1-206ENST00000573994 SMARCA2P51531 1590 aa19.07■□□□□ 0.64
RPA1-206ENST00000573994 HMGXB3Q12766 1538 aa19.02■□□□□ 0.64
RPA1-206ENST00000573994 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.63
RPA1-206ENST00000573994 BAZ1BQ9UIG0 1483 aaKnown RBP18.97■□□□□ 0.63
RPA1-206ENST00000573994 PEG3Q9GZU2 1588 aa18.95■□□□□ 0.62
RPA1-206ENST00000573994 ERCC6Q03468 1493 aa18.81■□□□□ 0.6
RPA1-206ENST00000573994 NESP48681 1621 aa18.81■□□□□ 0.6
RPA1-206ENST00000573994 WIZO95785 1651 aa18.79■□□□□ 0.6
RPA1-206ENST00000573994 RSF1Q96T23 1441 aaPredicted RBP18.71■□□□□ 0.59
RPA1-206ENST00000573994 LAMC3Q9Y6N6 1575 aa18.64■□□□□ 0.58
RPA1-206ENST00000573994 CUX2O14529 1486 aa18.63■□□□□ 0.57
RPA1-206ENST00000573994 SCAF1Q9H7N4 1312 aaKnown RBP18.58■□□□□ 0.57
RPA1-206ENST00000573994 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.56
RPA1-206ENST00000573994 CADPSQ9ULU8 1353 aa18.56■□□□□ 0.56
RPA1-206ENST00000573994 THOC2Q8NI27 1593 aaKnown RBP18.55■□□□□ 0.56
RPA1-206ENST00000573994 PDS5BQ9NTI5 1447 aa18.54■□□□□ 0.56
RPA1-206ENST00000573994 KIF21AQ7Z4S6 1674 aa18.53■□□□□ 0.56
RPA1-206ENST00000573994 CFTRP13569 1480 aa18.41■□□□□ 0.54
RPA1-206ENST00000573994 MRC2Q9UBG0 1479 aa18.4■□□□□ 0.54
RPA1-206ENST00000573994 FANCD2Q9BXW9 1451 aa18.39■□□□□ 0.53
RPA1-206ENST00000573994 CEP164Q9UPV0 1460 aa18.39■□□□□ 0.53
RPA1-206ENST00000573994 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
RPA1-206ENST00000573994 WDR62O43379 1518 aa18.33■□□□□ 0.53
RPA1-206ENST00000573994 DNAJC5Q9H3Z4 198 aa18.31■□□□□ 0.52
RPA1-206ENST00000573994 DMRT2Q9Y5R5 561 aa18.27■□□□□ 0.52
RPA1-206ENST00000573994 MAPK8IP2Q13387 824 aaPredicted RBP18.24■□□□□ 0.51
RPA1-206ENST00000573994 URB2Q14146 1524 aaKnown RBP18.23■□□□□ 0.51
RPA1-206ENST00000573994 PRDM2Q13029 1718 aa18.19■□□□□ 0.5
RPA1-206ENST00000573994 PPP4R3CPQ6ZMV5 832 aa18.14■□□□□ 0.49
RPA1-206ENST00000573994 SUPT5HO00267 1087 aaKnown RBP18.1■□□□□ 0.49
RPA1-206ENST00000573994 TOPBP1Q92547 1522 aa18.06■□□□□ 0.48
RPA1-206ENST00000573994 DNMBPQ6XZF7 1577 aa18.01■□□□□ 0.47
RPA1-206ENST00000573994 IFT140Q96RY7 1462 aa17.99■□□□□ 0.47
RPA1-206ENST00000573994 ZNF608Q9ULD9 1512 aaPredicted RBP17.98■□□□□ 0.47
RPA1-206ENST00000573994 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
RPA1-206ENST00000573994 POLA1P09884 1462 aaPredicted RBP17.9■□□□□ 0.46
RPA1-206ENST00000573994 EIF4G3O43432 1585 aaKnown RBP17.88■□□□□ 0.45
RPA1-206ENST00000573994 CUX1P39880 1505 aa17.86■□□□□ 0.45
RPA1-206ENST00000573994 TARBP1Q13395 1621 aaKnown RBP17.86■□□□□ 0.45
RPA1-206ENST00000573994 RAD54L2Q9Y4B4 1467 aa17.85■□□□□ 0.45
RPA1-206ENST00000573994 FGD5Q6ZNL6 1462 aa17.83■□□□□ 0.45
RPA1-206ENST00000573994 CNKSR2Q8WXI2 1034 aa17.83■□□□□ 0.44
RPA1-206ENST00000573994 AQRO60306 1485 aaKnown RBP eCLIP17.82■□□□□ 0.44
RPA1-206ENST00000573994 OSCARQ8IYS5 282 aa17.8■□□□□ 0.44
RPA1-206ENST00000573994 SOGA1O94964 1423 aa17.8■□□□□ 0.44
RPA1-206ENST00000573994 TDRD9Q8NDG6 1382 aaKnown RBP17.77■□□□□ 0.43
RPA1-206ENST00000573994 TRIM41Q8WV44 630 aa17.7■□□□□ 0.42
RPA1-206ENST00000573994 SNAPC4Q5SXM2 1469 aa17.68■□□□□ 0.42
RPA1-206ENST00000573994 NCBP3Q53F19 620 aaKnown RBP17.67■□□□□ 0.42
RPA1-206ENST00000573994 WDR97A6NE52 1622 aa17.66■□□□□ 0.42
RPA1-206ENST00000573994 FBLN2P98095 1184 aa17.66■□□□□ 0.42
RPA1-206ENST00000573994 CHD1O14646 1710 aa17.66■□□□□ 0.42
RPA1-206ENST00000573994 HOXD11P31277 338 aaPredicted RBP17.65■□□□□ 0.42
RPA1-206ENST00000573994 WRNQ14191 1432 aaPredicted RBP eCLIP17.64■□□□□ 0.42
RPA1-206ENST00000573994 SYNJ1O43426 1573 aa17.64■□□□□ 0.41
RPA1-206ENST00000573994 GRIN2BQ13224 1484 aa17.63■□□□□ 0.41
RPA1-206ENST00000573994 RNF216Q9NWF9 866 aaPredicted RBP17.62■□□□□ 0.41
RPA1-206ENST00000573994 ABCA10Q8WWZ4 1543 aa17.62■□□□□ 0.41
RPA1-206ENST00000573994 TOP2BQ02880 1626 aa17.61■□□□□ 0.41
RPA1-206ENST00000573994 GAPVD1Q14C86 1478 aa17.6■□□□□ 0.41
RPA1-206ENST00000573994 BIVM-ERCC5R4GMW8 1640 aa17.6■□□□□ 0.41
RPA1-206ENST00000573994 RIMBP3CA6NJZ7 1639 aa17.59■□□□□ 0.41
RPA1-206ENST00000573994 RIMBP3BA6NNM3 1639 aa17.59■□□□□ 0.41
RPA1-206ENST00000573994 RIMBP3Q9UFD9 1639 aa17.59■□□□□ 0.41
RPA1-206ENST00000573994 MAGI1Q96QZ7 1491 aaPredicted RBP17.59■□□□□ 0.41
RPA1-206ENST00000573994 ABCA5Q8WWZ7 1642 aa17.58■□□□□ 0.4
RPA1-206ENST00000573994 ARHGEF11O15085 1522 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms