RNA–Protein interactions for RNA: ENST00000476590.1

CD55-208, Transcript of CD55 molecule (Cromer blood group), humanhuman

TSL 1 (best)

Gene CD55, Length 2,163 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD55-208ENST00000476590 AEBP2Q6ZN18 517 aaPredicted RBP16.55■□□□□ 0.24
CD55-208ENST00000476590 POTEDQ86YR6 584 aa15.83■□□□□ 0.13
CD55-208ENST00000476590 CHIC1Q5VXU3 224 aa15.72■□□□□ 0.11
CD55-208ENST00000476590 SENP3Q9H4L4 574 aaPredicted RBP14.62□□□□□ -0.07
CD55-208ENST00000476590 PHF23Q9BUL5 403 aaPredicted RBP14.1□□□□□ -0.15
CD55-208ENST00000476590 FOXD1Q16676 465 aa13.66□□□□□ -0.22
CD55-208ENST00000476590 MSH5O43196 834 aa13.61□□□□□ -0.23
CD55-208ENST00000476590 CACNB1Q02641 598 aaPredicted RBP12.6□□□□□ -0.39
CD55-208ENST00000476590 PIAS4Q8N2W9 510 aaPredicted RBP12.44□□□□□ -0.42
CD55-208ENST00000476590 POTEHQ6S545 545 aa12.13□□□□□ -0.47
CD55-208ENST00000476590 PPP6R1Q9UPN7 881 aa11.44□□□□□ -0.58
CD55-208ENST00000476590 ADRA2BP18089 450 aa11.36□□□□□ -0.59
CD55-208ENST00000476590 RNF39Q9H2S5 420 aa11.33□□□□□ -0.6
CD55-208ENST00000476590 DMRT2Q9Y5R5 561 aa11.29□□□□□ -0.6
CD55-208ENST00000476590 C1QBPQ07021 282 aaKnown RBP11.18□□□□□ -0.62
CD55-208ENST00000476590 DCAF8L1A6NGE4 600 aa10.91□□□□□ -0.66
CD55-208ENST00000476590 MAPK8IP2Q13387 824 aaPredicted RBP10.88□□□□□ -0.67
CD55-208ENST00000476590 PLPPR3Q6T4P5 718 aa10.8□□□□□ -0.68
CD55-208ENST00000476590 SCAF1Q9H7N4 1312 aaKnown RBP10.7□□□□□ -0.7
CD55-208ENST00000476590 PLSCR2Q9NRY7 297 aa10.69□□□□□ -0.7
CD55-208ENST00000476590 SP7Q8TDD2 431 aaPredicted RBP10.64□□□□□ -0.71
CD55-208ENST00000476590 DNAJC5BQ9UF47 199 aa10.35□□□□□ -0.75
CD55-208ENST00000476590 HOXD11P31277 338 aaPredicted RBP10.25□□□□□ -0.77
CD55-208ENST00000476590 CHRDL2Q6WN34 429 aa10.1□□□□□ -0.79
CD55-208ENST00000476590 DSG3P32926 999 aa10.05□□□□□ -0.8
CD55-208ENST00000476590 LHX8Q68G74 356 aa9.97□□□□□ -0.81
CD55-208ENST00000476590 RBM42Q9BTD8 480 aaKnown RBP9.83□□□□□ -0.84
CD55-208ENST00000476590 HAX1O00165 279 aa9.81□□□□□ -0.84
CD55-208ENST00000476590 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.8□□□□□ -0.84
CD55-208ENST00000476590 CAPN15O75808 1086 aa9.8□□□□□ -0.84
CD55-208ENST00000476590 RNF216Q9NWF9 866 aaPredicted RBP9.77□□□□□ -0.85
CD55-208ENST00000476590 SPINK5Q9NQ38 1064 aaPredicted RBP9.6□□□□□ -0.87
CD55-208ENST00000476590 PCDH10Q9P2E7 1040 aa9.58□□□□□ -0.88
CD55-208ENST00000476590 PIP4P2Q8N4L2 257 aa9.48□□□□□ -0.89
CD55-208ENST00000476590 CNKSR2Q8WXI2 1034 aa9.46□□□□□ -0.89
CD55-208ENST00000476590 POTEMA6NI47 508 aa9.44□□□□□ -0.9
CD55-208ENST00000476590 EVX2Q03828 476 aa9.37□□□□□ -0.91
CD55-208ENST00000476590 POTEGQ6S5H5 508 aa9.36□□□□□ -0.91
CD55-208ENST00000476590 ABCB7O75027 752 aa9.33□□□□□ -0.92
CD55-208ENST00000476590 U3KPZ7 1027 aaPredicted RBP9.3□□□□□ -0.92
CD55-208ENST00000476590 ZNF219Q9P2Y4 722 aaPredicted RBP9.25□□□□□ -0.93
CD55-208ENST00000476590 GABBR2O75899 941 aa9.22□□□□□ -0.93
CD55-208ENST00000476590 TRHP20396 242 aaPredicted RBP9.22□□□□□ -0.93
CD55-208ENST00000476590 APLP2Q06481 763 aa9.22□□□□□ -0.93
CD55-208ENST00000476590 FXR2P51116 673 aaKnown RBP eCLIP9.2□□□□□ -0.94
CD55-208ENST00000476590 AKT1S1Q96B36 256 aa9.2□□□□□ -0.94
CD55-208ENST00000476590 PPP4R3CPQ6ZMV5 832 aa9.19□□□□□ -0.94
CD55-208ENST00000476590 REM2Q8IYK8 340 aaPredicted RBP9.03□□□□□ -0.96
CD55-208ENST00000476590 C19orf67A6NJJ6 358 aa8.98□□□□□ -0.97
CD55-208ENST00000476590 OTUD5Q96G74 571 aa8.92□□□□□ -0.98
CD55-208ENST00000476590 PITPNM1O00562 1244 aa8.92□□□□□ -0.98
CD55-208ENST00000476590 POTEIP0CG38 1075 aa8.91□□□□□ -0.98
CD55-208ENST00000476590 CLCN6P51797 869 aa8.77□□□□□ -1.01
CD55-208ENST00000476590 DCBLD2Q96PD2 775 aa8.73□□□□□ -1.01
CD55-208ENST00000476590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.72□□□□□ -1.01
CD55-208ENST00000476590 HNRNPUL2Q1KMD3 747 aaKnown RBP8.72□□□□□ -1.01
CD55-208ENST00000476590 PRKAR2AP13861 404 aaKnown RBP8.71□□□□□ -1.01
CD55-208ENST00000476590 CDAN1Q8IWY9 1227 aa8.65□□□□□ -1.03
CD55-208ENST00000476590 FAM163AQ96GL9 167 aaPredicted RBP8.62□□□□□ -1.03
CD55-208ENST00000476590 MMRN1Q13201 1228 aa8.62□□□□□ -1.03
CD55-208ENST00000476590 POLA2Q14181 598 aa8.58□□□□□ -1.04
CD55-208ENST00000476590 LCE2DQ5TA82 110 aaPredicted RBP8.58□□□□□ -1.04
CD55-208ENST00000476590 POTEB2H3BUK9 544 aa8.54□□□□□ -1.04
CD55-208ENST00000476590 SAMD1Q6SPF0 538 aaPredicted RBP8.54□□□□□ -1.04
CD55-208ENST00000476590 NCBP3Q53F19 620 aaKnown RBP8.52□□□□□ -1.04
CD55-208ENST00000476590 MAMSTRQ6ZN01 415 aa8.5□□□□□ -1.05
CD55-208ENST00000476590 ZBTB12Q9Y330 459 aaPredicted RBP8.5□□□□□ -1.05
CD55-208ENST00000476590 SPNS2Q8IVW8 549 aa8.45□□□□□ -1.06
CD55-208ENST00000476590 CD44P16070 742 aaKnown RBP8.35□□□□□ -1.07
CD55-208ENST00000476590 OSCARQ8IYS5 282 aa8.34□□□□□ -1.08
CD55-208ENST00000476590 SCUBE2Q9NQ36 999 aa8.29□□□□□ -1.08
CD55-208ENST00000476590 SPDYE1Q8NFV5 336 aaPredicted RBP8.28□□□□□ -1.08
CD55-208ENST00000476590 CLEC11AQ9Y240 323 aa8.26□□□□□ -1.09
CD55-208ENST00000476590 NPM3O75607 178 aaKnown RBP8.17□□□□□ -1.1
CD55-208ENST00000476590 SLC4A2P04920 1241 aa8.17□□□□□ -1.1
CD55-208ENST00000476590 CHADLQ6NUI6 762 aa8.17□□□□□ -1.1
CD55-208ENST00000476590 ZNF579Q8NAF0 562 aaKnown RBP8.17□□□□□ -1.1
CD55-208ENST00000476590 POTEJP0CG39 1038 aa8.14□□□□□ -1.11
CD55-208ENST00000476590 C7P10643 843 aa8.1□□□□□ -1.11
CD55-208ENST00000476590 METRNQ9UJH8 293 aa8.1□□□□□ -1.11
CD55-208ENST00000476590 SLC39A7Q92504 469 aa8.09□□□□□ -1.11
CD55-208ENST00000476590 GALR2O43603 387 aaPredicted RBP8.07□□□□□ -1.12
CD55-208ENST00000476590 PELP1Q8IZL8 1130 aaKnown RBP8.02□□□□□ -1.13
CD55-208ENST00000476590 SPDYE2BA6NHP3 402 aa8.01□□□□□ -1.13
CD55-208ENST00000476590 SPDYE6P0CI01 402 aa8.01□□□□□ -1.13
CD55-208ENST00000476590 SPDYE2Q495Y8 402 aa8.01□□□□□ -1.13
CD55-208ENST00000476590 ZRANB1Q9UGI0 708 aa8□□□□□ -1.13
CD55-208ENST00000476590 FARP1Q9Y4F1 1045 aaPredicted RBP7.98□□□□□ -1.13
CD55-208ENST00000476590 ST18O60284 1047 aa7.97□□□□□ -1.13
CD55-208ENST00000476590 PRR29P0C7W0 189 aa7.94□□□□□ -1.14
CD55-208ENST00000476590 TMEM121BQ9BXQ6 578 aaPredicted RBP7.9□□□□□ -1.15
CD55-208ENST00000476590 SLC24A1O60721 1099 aa7.88□□□□□ -1.15
CD55-208ENST00000476590 ASTLQ6HA08 431 aaPredicted RBP7.87□□□□□ -1.15
CD55-208ENST00000476590 ATMINO43313 823 aaPredicted RBP7.8□□□□□ -1.16
CD55-208ENST00000476590 ATF5Q9Y2D1 282 aaPredicted RBP7.74□□□□□ -1.17
CD55-208ENST00000476590 PAK3O75914 559 aaPredicted RBP7.73□□□□□ -1.17
CD55-208ENST00000476590 MYCNP04198 464 aaPredicted RBP7.73□□□□□ -1.17
CD55-208ENST00000476590 RNF166Q96A37 237 aaPredicted RBP7.72□□□□□ -1.17
CD55-208ENST00000476590 SLAIN1Q8ND83 568 aa7.69□□□□□ -1.18
CD55-208ENST00000476590 KRTAP3-3Q9BYR6 98 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms