RNA–Protein interactions for RNA: ENST00000175091.4

LAPTM4A-201, Transcript of lysosomal protein transmembrane 4 alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LAPTM4A, Length 1,765 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4A-201ENST00000175091 NISCHQ9Y2I1 1504 aa35.4■■■■□ 3.26
LAPTM4A-201ENST00000175091 CCDC180Q9P1Z9 1646 aa30.92■■■□□ 2.54
LAPTM4A-201ENST00000175091 ZCCHC6Q5VYS8 1495 aaKnown RBP29.8■■■□□ 2.36
LAPTM4A-201ENST00000175091 DCAF1Q9Y4B6 1507 aa29.31■■■□□ 2.28
LAPTM4A-201ENST00000175091 ABCC9O60706 1549 aa28.99■■■□□ 2.23
LAPTM4A-201ENST00000175091 DCAF8L2P0C7V8 631 aa28.96■■■□□ 2.23
LAPTM4A-201ENST00000175091 MYO15BQ96JP2 1530 aa28.93■■■□□ 2.22
LAPTM4A-201ENST00000175091 SHROOM4Q9ULL8 1493 aa28.83■■■□□ 2.21
LAPTM4A-201ENST00000175091 NACADO15069 1562 aa28.69■■■□□ 2.18
LAPTM4A-201ENST00000175091 RB1CC1Q8TDY2 1594 aa28.42■■■□□ 2.14
LAPTM4A-201ENST00000175091 SCRIBQ14160 1630 aa28.38■■■□□ 2.13
LAPTM4A-201ENST00000175091 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
LAPTM4A-201ENST00000175091 SUPT5HO00267 1087 aaKnown RBP27.73■■■□□ 2.03
LAPTM4A-201ENST00000175091 BICRAQ9NZM4 1560 aa27.6■■■□□ 2.01
LAPTM4A-201ENST00000175091 CECR2Q9BXF3 1484 aa27.46■■□□□ 1.99
LAPTM4A-201ENST00000175091 RSF1Q96T23 1441 aaPredicted RBP27.46■■□□□ 1.99
LAPTM4A-201ENST00000175091 MROH2BQ7Z745 1585 aa27.35■■□□□ 1.97
LAPTM4A-201ENST00000175091 BAZ1AQ9NRL2 1556 aaPredicted RBP27.34■■□□□ 1.97
LAPTM4A-201ENST00000175091 PABPN1Q86U42 306 aaKnown RBP eCLIP27.27■■□□□ 1.96
LAPTM4A-201ENST00000175091 SMARCA4P51532 1647 aa27.24■■□□□ 1.95
LAPTM4A-201ENST00000175091 WIZO95785 1651 aa27.16■■□□□ 1.94
LAPTM4A-201ENST00000175091 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
LAPTM4A-201ENST00000175091 TOP2AP11388 1531 aaKnown RBP26.89■■□□□ 1.89
LAPTM4A-201ENST00000175091 EIF4G1Q04637 1599 aaKnown RBP26.74■■□□□ 1.87
LAPTM4A-201ENST00000175091 SMARCA2P51531 1590 aa26.71■■□□□ 1.87
LAPTM4A-201ENST00000175091 ATAD2BQ9ULI0 1458 aa26.7■■□□□ 1.86
LAPTM4A-201ENST00000175091 CHIC1Q5VXU3 224 aa26.64■■□□□ 1.86
LAPTM4A-201ENST00000175091 BAZ1BQ9UIG0 1483 aaKnown RBP26.56■■□□□ 1.84
LAPTM4A-201ENST00000175091 CCDC88BA6NC98 1476 aa26.54■■□□□ 1.84
LAPTM4A-201ENST00000175091 HMGXB3Q12766 1538 aa26.5■■□□□ 1.83
LAPTM4A-201ENST00000175091 NCAPD3P42695 1498 aa26.44■■□□□ 1.82
LAPTM4A-201ENST00000175091 CC2D2AQ9P2K1 1620 aa26.31■■□□□ 1.8
LAPTM4A-201ENST00000175091 TRIM41Q8WV44 630 aa26.07■■□□□ 1.76
LAPTM4A-201ENST00000175091 ABCC8Q09428 1581 aa26.07■■□□□ 1.76
LAPTM4A-201ENST00000175091 PRDM2Q13029 1718 aa25.93■■□□□ 1.74
LAPTM4A-201ENST00000175091 CFTRP13569 1480 aa25.9■■□□□ 1.74
LAPTM4A-201ENST00000175091 WRNQ14191 1432 aaPredicted RBP eCLIP25.84■■□□□ 1.735e-6■■■■■ 29.2
LAPTM4A-201ENST00000175091 SYNJ1O43426 1573 aa25.81■■□□□ 1.72
LAPTM4A-201ENST00000175091 CADPSQ9ULU8 1353 aa25.73■■□□□ 1.71
LAPTM4A-201ENST00000175091 BIVM-ERCC5R4GMW8 1640 aa25.71■■□□□ 1.71
LAPTM4A-201ENST00000175091 TOP2BQ02880 1626 aa25.7■■□□□ 1.7
LAPTM4A-201ENST00000175091 LAMC3Q9Y6N6 1575 aa25.58■■□□□ 1.69
LAPTM4A-201ENST00000175091 CUX1P39880 1505 aa25.58■■□□□ 1.69
LAPTM4A-201ENST00000175091 LOC105371045A0A1W2PR82 267 aa25.57■■□□□ 1.68
LAPTM4A-201ENST00000175091 FAM9AQ8IZU1 332 aaPredicted RBP25.57■■□□□ 1.68
LAPTM4A-201ENST00000175091 SOGA1O94964 1423 aa25.54■■□□□ 1.68
LAPTM4A-201ENST00000175091 EEA1Q15075 1411 aa25.54■■□□□ 1.68
LAPTM4A-201ENST00000175091 NESP48681 1621 aa25.51■■□□□ 1.67
LAPTM4A-201ENST00000175091 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
LAPTM4A-201ENST00000175091 DNAJC5BQ9UF47 199 aa25.48■■□□□ 1.67
LAPTM4A-201ENST00000175091 RUSC2Q8N2Y8 1516 aa25.45■■□□□ 1.66
LAPTM4A-201ENST00000175091 DNMBPQ6XZF7 1577 aa25.34■■□□□ 1.65
LAPTM4A-201ENST00000175091 CEP164Q9UPV0 1460 aa25.33■■□□□ 1.65
LAPTM4A-201ENST00000175091 KIF21AQ7Z4S6 1674 aa25.3■■□□□ 1.64
LAPTM4A-201ENST00000175091 PDS5BQ9NTI5 1447 aa25.29■■□□□ 1.64
LAPTM4A-201ENST00000175091 KIF21BO75037 1637 aa25.28■■□□□ 1.64
LAPTM4A-201ENST00000175091 CSRNP3Q8WYN3 585 aa25.28■■□□□ 1.64
LAPTM4A-201ENST00000175091 FGD5Q6ZNL6 1462 aa25.26■■□□□ 1.64
LAPTM4A-201ENST00000175091 TOPBP1Q92547 1522 aa25.25■■□□□ 1.63
LAPTM4A-201ENST00000175091 GOLGA3Q08378 1498 aa25.2■■□□□ 1.63
LAPTM4A-201ENST00000175091 URB2Q14146 1524 aaKnown RBP25.19■■□□□ 1.62
LAPTM4A-201ENST00000175091 EHMT2Q96KQ7 1210 aa25.18■■□□□ 1.62
LAPTM4A-201ENST00000175091 KIF27Q86VH2 1401 aa25.16■■□□□ 1.62
LAPTM4A-201ENST00000175091 POLA1P09884 1462 aaPredicted RBP25.14■■□□□ 1.62
LAPTM4A-201ENST00000175091 TNIKQ9UKE5 1360 aa25.1■■□□□ 1.61
LAPTM4A-201ENST00000175091 CUX2O14529 1486 aa25.08■■□□□ 1.61
LAPTM4A-201ENST00000175091 WDR97A6NE52 1622 aa25.08■■□□□ 1.61
LAPTM4A-201ENST00000175091 ERICH3Q5RHP9 1530 aa25.08■■□□□ 1.61
LAPTM4A-201ENST00000175091 PRXQ9BXM0 1461 aa25.07■■□□□ 1.6
LAPTM4A-201ENST00000175091 ABCA10Q8WWZ4 1543 aa25.06■■□□□ 1.6
LAPTM4A-201ENST00000175091 RAPGEF2Q9Y4G8 1499 aa25.05■■□□□ 1.6
LAPTM4A-201ENST00000175091 MRC2Q9UBG0 1479 aa25.01■■□□□ 1.59
LAPTM4A-201ENST00000175091 RAD54L2Q9Y4B4 1467 aa25.01■■□□□ 1.59
LAPTM4A-201ENST00000175091 CEP162Q5TB80 1403 aa25■■□□□ 1.59
LAPTM4A-201ENST00000175091 UBTFP17480 764 aaKnown RBP24.93■■□□□ 1.58
LAPTM4A-201ENST00000175091 WDR62O43379 1518 aa24.93■■□□□ 1.58
LAPTM4A-201ENST00000175091 TARBP1Q13395 1621 aaKnown RBP24.92■■□□□ 1.58
LAPTM4A-201ENST00000175091 ABCA5Q8WWZ7 1642 aa24.91■■□□□ 1.58
LAPTM4A-201ENST00000175091 IGF1RP08069 1367 aa24.9■■□□□ 1.58
LAPTM4A-201ENST00000175091 THOC2Q8NI27 1593 aaKnown RBP24.86■■□□□ 1.57
LAPTM4A-201ENST00000175091 CUL7Q14999 1698 aa24.85■■□□□ 1.57
LAPTM4A-201ENST00000175091 ERCC6Q03468 1493 aa24.84■■□□□ 1.57
LAPTM4A-201ENST00000175091 CARMIL1Q5VZK9 1371 aa24.77■■□□□ 1.56
LAPTM4A-201ENST00000175091 CLIP1P30622 1438 aa24.76■■□□□ 1.55
LAPTM4A-201ENST00000175091 GAPVD1Q14C86 1478 aa24.74■■□□□ 1.55
LAPTM4A-201ENST00000175091 PBRM1Q86U86 1689 aa24.73■■□□□ 1.55
LAPTM4A-201ENST00000175091 IFT140Q96RY7 1462 aa24.71■■□□□ 1.55
LAPTM4A-201ENST00000175091 TDRD9Q8NDG6 1382 aaKnown RBP24.7■■□□□ 1.55
LAPTM4A-201ENST00000175091 CTTNBP2Q8WZ74 1663 aa24.62■■□□□ 1.53
LAPTM4A-201ENST00000175091 VPS8Q8N3P4 1428 aa24.6■■□□□ 1.53
LAPTM4A-201ENST00000175091 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
LAPTM4A-201ENST00000175091 ARAP1Q96P48 1450 aa24.57■■□□□ 1.52
LAPTM4A-201ENST00000175091 ZNF608Q9ULD9 1512 aaPredicted RBP24.57■■□□□ 1.52
LAPTM4A-201ENST00000175091 ADAMTS12P58397 1594 aa24.57■■□□□ 1.52
LAPTM4A-201ENST00000175091 AQRO60306 1485 aaKnown RBP eCLIP24.56■■□□□ 1.522e-7■■□□□ 13.5
LAPTM4A-201ENST00000175091 GRIN2BQ13224 1484 aa24.54■■□□□ 1.52
LAPTM4A-201ENST00000175091 ARHGAP35Q9NRY4 1499 aa24.53■■□□□ 1.52
LAPTM4A-201ENST00000175091 TRIM26Q12899 539 aaPredicted RBP24.52■■□□□ 1.52
LAPTM4A-201ENST00000175091 PCGF6Q9BYE7 350 aa24.51■■□□□ 1.51
LAPTM4A-201ENST00000175091 FHAD1B1AJZ9 1412 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms