RNA–Protein interactions for RNA: ENST00000367630.8

VTA1-202, Transcript of vesicle trafficking 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTA1, Length 7,028 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-202ENST00000367630 NISCHQ9Y2I1 1504 aa14.06□□□□□ -0.16
VTA1-202ENST00000367630 CCDC180Q9P1Z9 1646 aa12.28□□□□□ -0.44
VTA1-202ENST00000367630 ZCCHC6Q5VYS8 1495 aaKnown RBP11.88□□□□□ -0.51
VTA1-202ENST00000367630 DCAF1Q9Y4B6 1507 aa11.84□□□□□ -0.51
VTA1-202ENST00000367630 DCAF8L2P0C7V8 631 aa11.78□□□□□ -0.52
VTA1-202ENST00000367630 SUPT5HO00267 1087 aaKnown RBP11.72□□□□□ -0.53
VTA1-202ENST00000367630 SHROOM4Q9ULL8 1493 aa11.67□□□□□ -0.54
VTA1-202ENST00000367630 ZEB1P37275 1124 aaPredicted RBP11.64□□□□□ -0.55
VTA1-202ENST00000367630 MYO15BQ96JP2 1530 aa11.6□□□□□ -0.55
VTA1-202ENST00000367630 NACADO15069 1562 aa11.43□□□□□ -0.58
VTA1-202ENST00000367630 CHIC1Q5VXU3 224 aa11.29□□□□□ -0.6
VTA1-202ENST00000367630 TRIM41Q8WV44 630 aa11.27□□□□□ -0.61
VTA1-202ENST00000367630 RB1CC1Q8TDY2 1594 aa11.26□□□□□ -0.61
VTA1-202ENST00000367630 PELP1Q8IZL8 1130 aaKnown RBP11.26□□□□□ -0.61
VTA1-202ENST00000367630 TRIM26Q12899 539 aaPredicted RBP11.25□□□□□ -0.61
VTA1-202ENST00000367630 ABCC9O60706 1549 aa11.24□□□□□ -0.61
VTA1-202ENST00000367630 HRCP23327 699 aa11.19□□□□□ -0.62
VTA1-202ENST00000367630 APLP2Q06481 763 aa11.17□□□□□ -0.62
VTA1-202ENST00000367630 EEA1Q15075 1411 aa11.13□□□□□ -0.63
VTA1-202ENST00000367630 MYT1Q01538 1121 aa11.13□□□□□ -0.63
VTA1-202ENST00000367630 SCRIBQ14160 1630 aa11.09□□□□□ -0.63
VTA1-202ENST00000367630 BAZ1AQ9NRL2 1556 aaPredicted RBP11.07□□□□□ -0.64
VTA1-202ENST00000367630 CENPBP07199 599 aaPredicted RBP11.05□□□□□ -0.64
VTA1-202ENST00000367630 PCGF6Q9BYE7 350 aa11.04□□□□□ -0.64
VTA1-202ENST00000367630 FAM9AQ8IZU1 332 aaPredicted RBP11.02□□□□□ -0.64
VTA1-202ENST00000367630 RSF1Q96T23 1441 aaPredicted RBP10.98□□□□□ -0.65
VTA1-202ENST00000367630 TOP2AP11388 1531 aaKnown RBP10.85□□□□□ -0.67
VTA1-202ENST00000367630 CLSPNQ9HAW4 1339 aa10.85□□□□□ -0.67
VTA1-202ENST00000367630 CCER1Q8TC90 406 aaPredicted RBP10.84□□□□□ -0.67
VTA1-202ENST00000367630 ACIN1Q9UKV3 1341 aaKnown RBP10.84□□□□□ -0.67
VTA1-202ENST00000367630 UBTFP17480 764 aaKnown RBP10.81□□□□□ -0.68
VTA1-202ENST00000367630 SMARCA2P51531 1590 aa10.8□□□□□ -0.68
VTA1-202ENST00000367630 GOLGA3Q08378 1498 aa10.78□□□□□ -0.68
VTA1-202ENST00000367630 TNIKQ9UKE5 1360 aa10.74□□□□□ -0.69
VTA1-202ENST00000367630 CEP164Q9UPV0 1460 aa10.74□□□□□ -0.69
VTA1-202ENST00000367630 SMARCA4P51532 1647 aa10.71□□□□□ -0.7
VTA1-202ENST00000367630 CSRNP3Q8WYN3 585 aa10.7□□□□□ -0.7
VTA1-202ENST00000367630 BAZ1BQ9UIG0 1483 aaKnown RBP10.68□□□□□ -0.7
VTA1-202ENST00000367630 WRNQ14191 1432 aaPredicted RBP eCLIP10.66□□□□□ -0.7
VTA1-202ENST00000367630 LOC105371045A0A1W2PR82 267 aa10.64□□□□□ -0.71
VTA1-202ENST00000367630 MROH2BQ7Z745 1585 aa10.64□□□□□ -0.71
VTA1-202ENST00000367630 CEP162Q5TB80 1403 aa10.57□□□□□ -0.72
VTA1-202ENST00000367630 WIZO95785 1651 aa10.54□□□□□ -0.72
VTA1-202ENST00000367630 PEG3Q9GZU2 1588 aa10.54□□□□□ -0.72
VTA1-202ENST00000367630 CCDC88BA6NC98 1476 aa10.54□□□□□ -0.72
VTA1-202ENST00000367630 CECR2Q9BXF3 1484 aa10.53□□□□□ -0.72
VTA1-202ENST00000367630 CLIP1P30622 1438 aa10.53□□□□□ -0.72
VTA1-202ENST00000367630 KIF27Q86VH2 1401 aa10.53□□□□□ -0.72
VTA1-202ENST00000367630 KIF21BO75037 1637 aa10.53□□□□□ -0.72
VTA1-202ENST00000367630 NEFLP07196 543 aa10.52□□□□□ -0.73
VTA1-202ENST00000367630 ZNF316A6NFI3 1004 aaPredicted RBP10.5□□□□□ -0.73
VTA1-202ENST00000367630 DIEXFQ68CQ4 756 aaKnown RBP10.49□□□□□ -0.73
VTA1-202ENST00000367630 HMGXB3Q12766 1538 aa10.47□□□□□ -0.73
VTA1-202ENST00000367630 ERICH3Q5RHP9 1530 aa10.47□□□□□ -0.73
VTA1-202ENST00000367630 FHAD1B1AJZ9 1412 aa10.46□□□□□ -0.73
VTA1-202ENST00000367630 ABCC8Q09428 1581 aa10.46□□□□□ -0.74
VTA1-202ENST00000367630 VPS8Q8N3P4 1428 aa10.46□□□□□ -0.74
VTA1-202ENST00000367630 TIMELESSQ9UNS1 1208 aa10.44□□□□□ -0.74
VTA1-202ENST00000367630 ATAD2BQ9ULI0 1458 aa10.42□□□□□ -0.74
VTA1-202ENST00000367630 EHMT2Q96KQ7 1210 aa10.41□□□□□ -0.74
VTA1-202ENST00000367630 NCAPD3P42695 1498 aa10.36□□□□□ -0.75
VTA1-202ENST00000367630 PABPN1Q86U42 306 aaKnown RBP eCLIP10.34□□□□□ -0.75
VTA1-202ENST00000367630 TOP2BQ02880 1626 aa10.33□□□□□ -0.76
VTA1-202ENST00000367630 EIF4G1Q04637 1599 aaKnown RBP10.33□□□□□ -0.76
VTA1-202ENST00000367630 CDK11AQ9UQ88 783 aaPredicted RBP10.31□□□□□ -0.76
VTA1-202ENST00000367630 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.3□□□□□ -0.76
VTA1-202ENST00000367630 MAP3K1Q13233 1512 aa10.29□□□□□ -0.76
VTA1-202ENST00000367630 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
VTA1-202ENST00000367630 BIVM-ERCC5R4GMW8 1640 aa10.28□□□□□ -0.76
VTA1-202ENST00000367630 EFCAB5A4FU69 1503 aa10.27□□□□□ -0.77
VTA1-202ENST00000367630 ERICH6Q7L0X2 663 aa10.27□□□□□ -0.77
VTA1-202ENST00000367630 FMN1Q68DA7 1419 aa10.26□□□□□ -0.77
VTA1-202ENST00000367630 TTBK1Q5TCY1 1321 aaPredicted RBP10.26□□□□□ -0.77
VTA1-202ENST00000367630 MYT1LQ9UL68 1186 aa10.26□□□□□ -0.77
VTA1-202ENST00000367630 PPARGC1BQ86YN6 1023 aaKnown RBP10.25□□□□□ -0.77
VTA1-202ENST00000367630 RAPGEF2Q9Y4G8 1499 aa10.25□□□□□ -0.77
VTA1-202ENST00000367630 SOGA1O94964 1423 aa10.23□□□□□ -0.77
VTA1-202ENST00000367630 ANP32CO43423 234 aa10.23□□□□□ -0.77
VTA1-202ENST00000367630 UNC13AQ9UPW8 1703 aa10.22□□□□□ -0.77
VTA1-202ENST00000367630 CUX1P39880 1505 aa10.22□□□□□ -0.77
VTA1-202ENST00000367630 CCNB3Q8WWL7 1395 aa10.22□□□□□ -0.77
VTA1-202ENST00000367630 ATP1B4Q9UN42 357 aaPredicted RBP10.21□□□□□ -0.77
VTA1-202ENST00000367630 PDS5BQ9NTI5 1447 aa10.21□□□□□ -0.77
VTA1-202ENST00000367630 CADPSQ9ULU8 1353 aa10.21□□□□□ -0.78
VTA1-202ENST00000367630 CFTRP13569 1480 aa10.2□□□□□ -0.78
VTA1-202ENST00000367630 PRDM2Q13029 1718 aa10.2□□□□□ -0.78
VTA1-202ENST00000367630 BICRAQ9NZM4 1560 aa10.19□□□□□ -0.78
VTA1-202ENST00000367630 ARHGAP35Q9NRY4 1499 aa10.19□□□□□ -0.78
VTA1-202ENST00000367630 CARMIL1Q5VZK9 1371 aa10.18□□□□□ -0.78
VTA1-202ENST00000367630 TONSLQ96HA7 1378 aa10.18□□□□□ -0.78
VTA1-202ENST00000367630 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.18□□□□□ -0.78
VTA1-202ENST00000367630 CUL7Q14999 1698 aa10.17□□□□□ -0.78
VTA1-202ENST00000367630 CUX2O14529 1486 aa10.17□□□□□ -0.78
VTA1-202ENST00000367630 FAM50AQ14320 339 aaKnown RBP10.17□□□□□ -0.78
VTA1-202ENST00000367630 CCDC18Q5T9S5 1454 aa10.16□□□□□ -0.78
VTA1-202ENST00000367630 CC2D2AQ9P2K1 1620 aa10.16□□□□□ -0.78
VTA1-202ENST00000367630 MTUS2Q5JR59 1369 aa10.16□□□□□ -0.78
VTA1-202ENST00000367630 RANGAP1P46060 587 aaPredicted RBP10.15□□□□□ -0.78
VTA1-202ENST00000367630 SETD5Q9C0A6 1442 aa10.15□□□□□ -0.78
VTA1-202ENST00000367630 PRXQ9BXM0 1461 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms