Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.92■□□□□ 0.35e-6■□□□□ 9.6
UPF1Q92900 SEPT2-206ENST00000402092 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.355e-6■□□□□ 9.6
UPF1Q92900 SEPT2-201ENST00000360051 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.385e-6■□□□□ 9.6
UPF1Q92900 SEPT2-204ENST00000391973 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.45e-6■□□□□ 9.6
UPF1Q92900 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.366e-7■□□□□ 9.6
UPF1Q92900 SEPT9-214ENST00000586456 545 ntTSL 228.84■■■□□ 2.212e-8■□□□□ 9.6
UPF1Q92900 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.33■■□□□ 1.656e-7■□□□□ 9.6
UPF1Q92900 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.756e-7■□□□□ 9.6
UPF1Q92900 NMNAT1-203ENST00000462686 1818 ntTSL 519.74■□□□□ 0.756e-7■□□□□ 9.6
UPF1Q92900 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.676e-7■□□□□ 9.6
UPF1Q92900 ERI3-207ENST00000479101 367 ntTSL 318.95■□□□□ 0.621e-9■□□□□ 9.6
UPF1Q92900 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.561e-9■□□□□ 9.6
UPF1Q92900 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.326e-7■□□□□ 9.6
UPF1Q92900 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC16.26■□□□□ 0.191e-9■□□□□ 9.6
UPF1Q92900 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.141e-9■□□□□ 9.6
UPF1Q92900 PRR3-206ENST00000498336 2005 ntTSL 315.87■□□□□ 0.131e-9■□□□□ 9.6
UPF1Q92900 SLC2A3-209ENST00000543435 383 ntTSL 313.85□□□□□ -0.191e-11■□□□□ 9.6
UPF1Q92900 TRIP13-205ENST00000510412 571 ntTSL 513.47□□□□□ -0.256e-7■□□□□ 9.6
UPF1Q92900 ERI3-208ENST00000489710 394 ntTSL 313.3□□□□□ -0.281e-9■□□□□ 9.6
UPF1Q92900 PRR3-204ENST00000481741 1944 ntTSL 212.47□□□□□ -0.411e-9■□□□□ 9.6
UPF1Q92900 GIT1-204ENST00000473217 3462 ntTSL 1 (best)12.19□□□□□ -0.466e-7■□□□□ 9.6
UPF1Q92900 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC12.13□□□□□ -0.471e-9■□□□□ 9.6
UPF1Q92900 NMNAT1-201ENST00000377205 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.526e-7■□□□□ 9.6
UPF1Q92900 CBLL1-205ENST00000440859 4432 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.596e-7■□□□□ 9.6
UPF1Q92900 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC11.18□□□□□ -0.626e-7■□□□□ 9.6
UPF1Q92900 IQSEC1-205ENST00000618604 3744 ntTSL 1 (best) BASIC11.01□□□□□ -0.651e-9■□□□□ 9.6
UPF1Q92900 TRIP13-202ENST00000508430 306 ntTSL 310.36□□□□□ -0.756e-7■□□□□ 9.6
UPF1Q92900 ZNF776-201ENST00000317178 5292 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.776e-7■□□□□ 9.6
UPF1Q92900 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC10.21□□□□□ -0.781e-9■□□□□ 9.6
UPF1Q92900 RUBCN-203ENST00000413360 3801 ntTSL 59.98□□□□□ -0.816e-7■□□□□ 9.6
UPF1Q92900 BTK-202ENST00000372880 2248 ntTSL 2 BASIC9.6□□□□□ -0.871e-9■□□□□ 9.6
UPF1Q92900 PRR3-203ENST00000470703 3429 ntTSL 29.4□□□□□ -0.91e-9■□□□□ 9.6
UPF1Q92900 NMNAT1-205ENST00000496751 485 ntTSL 28.8□□□□□ -16e-7■□□□□ 9.6
UPF1Q92900 BTK-201ENST00000308731 2579 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.031e-9■□□□□ 9.6
UPF1Q92900 CDC27-211ENST00000570740 594 ntTSL 58.36□□□□□ -1.076e-7■□□□□ 9.6
UPF1Q92900 BTK-209ENST00000618050 2417 ntTSL 5 BASIC7.9□□□□□ -1.151e-9■□□□□ 9.6
UPF1Q92900 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.656e-7■□□□□ 9.6
UPF1Q92900 CDC42SE1-204ENST00000483763 2379 ntTSL 1 (best)10.96□□□□□ -0.651e-6■□□□□ 9.6
UPF1Q92900 CORO1C-210ENST00000549384 891 ntTSL 525■■□□□ 1.593e-17■□□□□ 9.6
UPF1Q92900 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.125e-8■□□□□ 9.6
UPF1Q92900 SIK3-204ENST00000445177 6331 ntAPPRIS ALT2 TSL 513.43□□□□□ -0.265e-8■□□□□ 9.6
UPF1Q92900 SIK3-206ENST00000454905 294 ntTSL 510.62□□□□□ -0.715e-8■□□□□ 9.6
UPF1Q92900 SIK3-212ENST00000488337 4220 ntTSL 1 (best)6.28□□□□□ -1.45e-8■□□□□ 9.6
UPF1Q92900 PCCB-214ENST00000478469 4502 ntTSL 1 (best) BASIC13.32□□□□□ -0.281e-7■□□□□ 9.6
UPF1Q92900 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.351e-7■□□□□ 9.6
UPF1Q92900 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.311e-323■□□□□ 9.6
UPF1Q92900 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.291e-323■□□□□ 9.6
UPF1Q92900 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.031e-323■□□□□ 9.6
UPF1Q92900 CDK19-207ENST00000468997 1083 ntTSL 1 (best)21.34■■□□□ 1.012e-11■□□□□ 9.6
UPF1Q92900 CDK19-208ENST00000497709 1117 ntTSL 321.29■■□□□ 12e-11■□□□□ 9.6
UPF1Q92900 CDK19-205ENST00000460913 448 ntTSL 520.36■□□□□ 0.852e-11■□□□□ 9.6
UPF1Q92900 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.312e-11■□□□□ 9.6
UPF1Q92900 CDK19-204ENST00000457688 955 ntTSL 515.24■□□□□ 0.032e-11■□□□□ 9.6
UPF1Q92900 CDK19-201ENST00000323817 6067 ntTSL 1 (best) BASIC8.62□□□□□ -1.032e-11■□□□□ 9.6
UPF1Q92900 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC8.04□□□□□ -1.122e-11■□□□□ 9.6
UPF1Q92900 SNW1-201ENST00000261531 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.472e-9■□□□□ 9.5
UPF1Q92900 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC9.88□□□□□ -0.832e-9■□□□□ 9.5
UPF1Q92900 SNW1-206ENST00000556428 1966 ntTSL 29.15□□□□□ -0.942e-9■□□□□ 9.5
UPF1Q92900 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)17.4■□□□□ 0.381e-16■□□□□ 9.5
UPF1Q92900 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC14.4□□□□□ -0.11e-16■□□□□ 9.5
UPF1Q92900 SRSF1-207ENST00000584668 758 ntTSL 313.14□□□□□ -0.311e-16■□□□□ 9.5
UPF1Q92900 SRSF1-203ENST00000581497 438 ntTSL 312.83□□□□□ -0.361e-16■□□□□ 9.5
UPF1Q92900 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC6.9□□□□□ -1.31e-16■□□□□ 9.5
UPF1Q92900 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.815e-12■□□□□ 9.5
UPF1Q92900 MGAT4B-212ENST00000520134 592 ntTSL 332.25■■■□□ 2.759e-7■□□□□ 9.5
UPF1Q92900 MGAT4B-221ENST00000523108 1080 ntTSL 532.25■■■□□ 2.759e-7■□□□□ 9.5
UPF1Q92900 MGAT4B-208ENST00000519616 522 ntTSL 531.71■■■□□ 2.679e-7■□□□□ 9.5
UPF1Q92900 ESPN-210ENST00000478323 270 ntTSL 527.92■■■□□ 2.066e-9■□□□□ 9.5
UPF1Q92900 MGAT4B-203ENST00000518168 1013 ntTSL 226.65■■□□□ 1.869e-7■□□□□ 9.5
UPF1Q92900 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC26.39■■□□□ 1.825e-12■□□□□ 9.5
UPF1Q92900 MGAT4B-217ENST00000521305 1213 ntTSL 524.78■■□□□ 1.569e-7■□□□□ 9.5
UPF1Q92900 ATP11A-215ENST00000495930 564 ntTSL 422.94■■□□□ 1.269e-7■□□□□ 9.5
UPF1Q92900 MGAT4B-222ENST00000523329 543 ntTSL 322.62■■□□□ 1.219e-7■□□□□ 9.5
UPF1Q92900 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC19.08■□□□□ 0.645e-12■□□□□ 9.5
UPF1Q92900 MGAT4B-215ENST00000520918 799 ntTSL 318.76■□□□□ 0.599e-7■□□□□ 9.5
UPF1Q92900 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.335e-12■□□□□ 9.5
UPF1Q92900 ATP11A-214ENST00000493489 583 ntTSL 316.59■□□□□ 0.259e-7■□□□□ 9.5
UPF1Q92900 FGL1-204ENST00000398056 1967 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.174e-15■□□□□ 9.5
UPF1Q92900 ARAP1-205ENST00000426523 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.521e-8■□□□□ 9.5
UPF1Q92900 ARAP1-207ENST00000429686 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.591e-8■□□□□ 9.5
UPF1Q92900 CCNI-207ENST00000513774 517 ntTSL 411.31□□□□□ -0.64e-10■□□□□ 9.5
UPF1Q92900 CCNI-203ENST00000505609 541 ntTSL 49.59□□□□□ -0.874e-10■□□□□ 9.5
UPF1Q92900 PRKRIP1-207ENST00000482549 1625 ntTSL 1 (best)31.71■■■□□ 2.672e-6■□□□□ 9.5
UPF1Q92900 PRKRIP1-204ENST00000469763 1642 ntTSL 531.58■■■□□ 2.652e-6■□□□□ 9.5
UPF1Q92900 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC16.87■□□□□ 0.292e-6■□□□□ 9.5
UPF1Q92900 HK1-216ENST00000493591 916 ntTSL 58.61□□□□□ -1.031e-8■□□□□ 9.5
UPF1Q92900 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC25.82■■□□□ 1.723e-6■□□□□ 9.5
UPF1Q92900 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC23.43■■□□□ 1.343e-6■□□□□ 9.5
UPF1Q92900 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.08■□□□□ 0.648e-10■□□□□ 9.5
UPF1Q92900 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.791e-6■□□□□ 9.5
UPF1Q92900 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.061e-6■□□□□ 9.5
UPF1Q92900 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.321e-6■□□□□ 9.5
UPF1Q92900 TAOK2-206ENST00000570844 1721 ntTSL 226.12■■□□□ 1.775e-6■□□□□ 9.5
UPF1Q92900 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.115e-6■□□□□ 9.5
UPF1Q92900 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.241e-32■□□□□ 9.5
UPF1Q92900 HDAC1-206ENST00000476391 2409 ntTSL 1 (best)13.14□□□□□ -0.315e-6■□□□□ 9.5
UPF1Q92900 ACLY-204ENST00000537919 2974 ntTSL 2 BASIC12.8□□□□□ -0.365e-6■□□□□ 9.5
UPF1Q92900 NCAPD2-207ENST00000539084 4290 ntTSL 212.25□□□□□ -0.451e-32■□□□□ 9.5
UPF1Q92900 NCAPD2-202ENST00000382457 2844 ntTSL 511.89□□□□□ -0.511e-32■□□□□ 9.5
UPF1Q92900 NCAPD2-208ENST00000539714 533 ntTSL 39.6□□□□□ -0.871e-32■□□□□ 9.5
Retrieved 100 of 15,879 protein–RNA pairs in 459.6 ms