RNA–Protein interactions for RNA: ENST00000488337.5

SIK3-212, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 4,220 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-212ENST00000488337 PELP1Q8IZL8 1130 aaKnown RBP11.56□□□□□ -0.56
SIK3-212ENST00000488337 CHIC1Q5VXU3 224 aa11.49□□□□□ -0.57
SIK3-212ENST00000488337 MYT1Q01538 1121 aa11.34□□□□□ -0.59
SIK3-212ENST00000488337 AEBP2Q6ZN18 517 aaPredicted RBP11.22□□□□□ -0.61
SIK3-212ENST00000488337 NISCHQ9Y2I1 1504 aa11.15□□□□□ -0.63
SIK3-212ENST00000488337 TTBK1Q5TCY1 1321 aaPredicted RBP10.98□□□□□ -0.65
SIK3-212ENST00000488337 HRCP23327 699 aa10.89□□□□□ -0.67
SIK3-212ENST00000488337 PRKCSHP14314 528 aaPredicted RBP10.69□□□□□ -0.7
SIK3-212ENST00000488337 SCAF1Q9H7N4 1312 aaKnown RBP10.68□□□□□ -0.7
SIK3-212ENST00000488337 APLP2Q06481 763 aa10.55□□□□□ -0.72
SIK3-212ENST00000488337 PPARGC1BQ86YN6 1023 aaKnown RBP10.46□□□□□ -0.74
SIK3-212ENST00000488337 BCL11AQ9H165 835 aa10.45□□□□□ -0.74
SIK3-212ENST00000488337 FAM9AQ8IZU1 332 aaPredicted RBP10.38□□□□□ -0.75
SIK3-212ENST00000488337 ERICH6Q7L0X2 663 aa10.35□□□□□ -0.75
SIK3-212ENST00000488337 PHF23Q9BUL5 403 aaPredicted RBP10.28□□□□□ -0.76
SIK3-212ENST00000488337 MYO15BQ96JP2 1530 aa10.2□□□□□ -0.78
SIK3-212ENST00000488337 DCAF8L2P0C7V8 631 aa10.2□□□□□ -0.78
SIK3-212ENST00000488337 SLC24A1O60721 1099 aa10.16□□□□□ -0.78
SIK3-212ENST00000488337 ACIN1Q9UKV3 1341 aaKnown RBP10.16□□□□□ -0.78
SIK3-212ENST00000488337 CENPBP07199 599 aaPredicted RBP10.1□□□□□ -0.79
SIK3-212ENST00000488337 NEUROD1Q13562 356 aa10.07□□□□□ -0.8
SIK3-212ENST00000488337 PCGF6Q9BYE7 350 aa10.07□□□□□ -0.8
SIK3-212ENST00000488337 CCDC180Q9P1Z9 1646 aa10.04□□□□□ -0.8
SIK3-212ENST00000488337 GTF3C3Q9Y5Q9 886 aa10.01□□□□□ -0.81
SIK3-212ENST00000488337 ANP32EQ9BTT0 268 aa9.99□□□□□ -0.81
SIK3-212ENST00000488337 DCAF1Q9Y4B6 1507 aa9.98□□□□□ -0.81
SIK3-212ENST00000488337 SUPT5HO00267 1087 aaKnown RBP9.98□□□□□ -0.81
SIK3-212ENST00000488337 SHROOM4Q9ULL8 1493 aa9.97□□□□□ -0.81
SIK3-212ENST00000488337 ZEB1P37275 1124 aaPredicted RBP9.95□□□□□ -0.82
SIK3-212ENST00000488337 DAXXQ9UER7 740 aaPredicted RBP9.9□□□□□ -0.83
SIK3-212ENST00000488337 CSRNP3Q8WYN3 585 aa9.87□□□□□ -0.83
SIK3-212ENST00000488337 UBE2Q2Q8WVN8 375 aa9.77□□□□□ -0.85
SIK3-212ENST00000488337 TRIM26Q12899 539 aaPredicted RBP9.72□□□□□ -0.85
SIK3-212ENST00000488337 EIF5BO60841 1220 aaKnown RBP9.69□□□□□ -0.86
SIK3-212ENST00000488337 ANO8Q9HCE9 1232 aaPredicted RBP9.68□□□□□ -0.86
SIK3-212ENST00000488337 TSHZ2Q9NRE2 1034 aa9.64□□□□□ -0.87
SIK3-212ENST00000488337 PLEKHG5O94827 1062 aa9.53□□□□□ -0.88
SIK3-212ENST00000488337 CLSPNQ9HAW4 1339 aa9.52□□□□□ -0.89
SIK3-212ENST00000488337 DIEXFQ68CQ4 756 aaKnown RBP9.5□□□□□ -0.89
SIK3-212ENST00000488337 SALL2Q9Y467 1007 aaPredicted RBP9.48□□□□□ -0.89
SIK3-212ENST00000488337 ERICH6BQ5W0A0 696 aa9.48□□□□□ -0.89
SIK3-212ENST00000488337 TRIM41Q8WV44 630 aa9.47□□□□□ -0.89
SIK3-212ENST00000488337 PLPPR3Q6T4P5 718 aa9.46□□□□□ -0.89
SIK3-212ENST00000488337 SUPT16HQ9Y5B9 1047 aaKnown RBP9.46□□□□□ -0.9
SIK3-212ENST00000488337 LOC105371045A0A1W2PR82 267 aa9.42□□□□□ -0.9
SIK3-212ENST00000488337 PKNOX2Q96KN3 472 aa9.42□□□□□ -0.9
SIK3-212ENST00000488337 ZCCHC6Q5VYS8 1495 aaKnown RBP9.4□□□□□ -0.9
SIK3-212ENST00000488337 MSH5O43196 834 aa9.37□□□□□ -0.91
SIK3-212ENST00000488337 MYT1LQ9UL68 1186 aa9.37□□□□□ -0.91
SIK3-212ENST00000488337 PODXL2Q9NZ53 605 aa9.36□□□□□ -0.91
SIK3-212ENST00000488337 CCDC136Q96JN2 1154 aa9.32□□□□□ -0.92
SIK3-212ENST00000488337 RBM19Q9Y4C8 960 aaKnown RBP9.28□□□□□ -0.92
SIK3-212ENST00000488337 DEKP35659 375 aaKnown RBP9.28□□□□□ -0.92
SIK3-212ENST00000488337 FANCIQ9NVI1 1328 aa9.25□□□□□ -0.93
SIK3-212ENST00000488337 EHMT2Q96KQ7 1210 aa9.24□□□□□ -0.93
SIK3-212ENST00000488337 MIER1Q8N108 512 aa9.22□□□□□ -0.93
SIK3-212ENST00000488337 YTHDC1Q96MU7 727 aaKnown RBP9.2□□□□□ -0.94
SIK3-212ENST00000488337 SENP3Q9H4L4 574 aaPredicted RBP9.2□□□□□ -0.94
SIK3-212ENST00000488337 ZNF316A6NFI3 1004 aaPredicted RBP9.2□□□□□ -0.94
SIK3-212ENST00000488337 ABCC9O60706 1549 aa9.15□□□□□ -0.94
SIK3-212ENST00000488337 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.14□□□□□ -0.95
SIK3-212ENST00000488337 NACADO15069 1562 aa9.14□□□□□ -0.95
SIK3-212ENST00000488337 IL27Q8NEV9 243 aa9.12□□□□□ -0.95
SIK3-212ENST00000488337 CCER1Q8TC90 406 aaPredicted RBP9.09□□□□□ -0.95
SIK3-212ENST00000488337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.08□□□□□ -0.96
SIK3-212ENST00000488337 NEFLP07196 543 aa9.08□□□□□ -0.96
SIK3-212ENST00000488337 FGD1P98174 961 aa9.08□□□□□ -0.96
SIK3-212ENST00000488337 ZMYND15Q9H091 742 aa9.07□□□□□ -0.96
SIK3-212ENST00000488337 C11orf95C9JLR9 678 aaPredicted RBP9.06□□□□□ -0.96
SIK3-212ENST00000488337 RB1CC1Q8TDY2 1594 aa9.05□□□□□ -0.96
SIK3-212ENST00000488337 AAMPQ13685 434 aa9.03□□□□□ -0.96
SIK3-212ENST00000488337 PDIA4P13667 645 aaKnown RBP9.03□□□□□ -0.96
SIK3-212ENST00000488337 NCBP3Q53F19 620 aaKnown RBP9.03□□□□□ -0.96
SIK3-212ENST00000488337 PDE4CQ08493 712 aa9.02□□□□□ -0.97
SIK3-212ENST00000488337 WASHC2AQ641Q2 1341 aa8.97□□□□□ -0.97
SIK3-212ENST00000488337 WASHC2CQ9Y4E1 1318 aa8.97□□□□□ -0.97
SIK3-212ENST00000488337 KCNA4P22459 653 aa8.96□□□□□ -0.98
SIK3-212ENST00000488337 KLHL34Q8N239 644 aa8.96□□□□□ -0.98
SIK3-212ENST00000488337 RSF1Q96T23 1441 aaPredicted RBP8.95□□□□□ -0.98
SIK3-212ENST00000488337 ARXQ96QS3 562 aa8.94□□□□□ -0.98
SIK3-212ENST00000488337 RBM10P98175 930 aaKnown RBP8.94□□□□□ -0.98
SIK3-212ENST00000488337 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
SIK3-212ENST00000488337 RSPH6AQ9H0K4 717 aa8.94□□□□□ -0.98
SIK3-212ENST00000488337 RTN4Q9NQC3 1192 aaKnown RBP8.93□□□□□ -0.98
SIK3-212ENST00000488337 BCL11BQ9C0K0 894 aaPredicted RBP8.91□□□□□ -0.98
SIK3-212ENST00000488337 ADRA2BP18089 450 aa8.91□□□□□ -0.98
SIK3-212ENST00000488337 GLIPR1L2Q4G1C9 344 aa8.9□□□□□ -0.98
SIK3-212ENST00000488337 SCRIBQ14160 1630 aa8.9□□□□□ -0.99
SIK3-212ENST00000488337 FKBP8Q14318 412 aa8.89□□□□□ -0.99
SIK3-212ENST00000488337 VSIG10Q8N0Z9 540 aa8.88□□□□□ -0.99
SIK3-212ENST00000488337 TAF7LQ5H9L4 462 aa8.86□□□□□ -0.99
SIK3-212ENST00000488337 BCANQ96GW7 911 aa8.86□□□□□ -0.99
SIK3-212ENST00000488337 NOP58Q9Y2X3 529 aaKnown RBP8.86□□□□□ -0.99
SIK3-212ENST00000488337 PAK3O75914 559 aaPredicted RBP8.85□□□□□ -0.99
SIK3-212ENST00000488337 UBTFP17480 764 aaKnown RBP8.85□□□□□ -0.99
SIK3-212ENST00000488337 TIMELESSQ9UNS1 1208 aa8.84□□□□□ -0.99
SIK3-212ENST00000488337 A0A0U1RQG5 324 aaPredicted RBP8.83□□□□□ -1
SIK3-212ENST00000488337 PRDM4Q9UKN5 801 aa8.81□□□□□ -1
SIK3-212ENST00000488337 ITGAEP38570 1179 aa8.8□□□□□ -1
SIK3-212ENST00000488337 NBR1Q14596 966 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 845.3 ms