RNA–Protein interactions for RNA: ENST00000471595.5

PCCB-210, Transcript of propionyl-CoA carboxylase subunit beta, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCCB, Length 6,090 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCCB-210ENST00000471595 NISCHQ9Y2I1 1504 aa22.31■■□□□ 1.16
PCCB-210ENST00000471595 DCAF8L2P0C7V8 631 aa22.13■■□□□ 1.13
PCCB-210ENST00000471595 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
PCCB-210ENST00000471595 SHROOM4Q9ULL8 1493 aa21.11■□□□□ 0.97
PCCB-210ENST00000471595 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
PCCB-210ENST00000471595 PELP1Q8IZL8 1130 aaKnown RBP20.22■□□□□ 0.83
PCCB-210ENST00000471595 APLP2Q06481 763 aa20.2■□□□□ 0.82
PCCB-210ENST00000471595 PCGF6Q9BYE7 350 aa20.19■□□□□ 0.82
PCCB-210ENST00000471595 FAM9AQ8IZU1 332 aaPredicted RBP20.1■□□□□ 0.81
PCCB-210ENST00000471595 ZEB1P37275 1124 aaPredicted RBP20.04■□□□□ 0.8
PCCB-210ENST00000471595 TRIM41Q8WV44 630 aa19.96■□□□□ 0.79
PCCB-210ENST00000471595 CENPBP07199 599 aaPredicted RBP19.77■□□□□ 0.76
PCCB-210ENST00000471595 TTBK1Q5TCY1 1321 aaPredicted RBP19.76■□□□□ 0.75
PCCB-210ENST00000471595 CCER1Q8TC90 406 aaPredicted RBP19.73■□□□□ 0.75
PCCB-210ENST00000471595 UBTFP17480 764 aaKnown RBP19.56■□□□□ 0.72
PCCB-210ENST00000471595 TRIM26Q12899 539 aaPredicted RBP19.54■□□□□ 0.72
PCCB-210ENST00000471595 RANGAP1P46060 587 aaPredicted RBP19.49■□□□□ 0.71
PCCB-210ENST00000471595 HRCP23327 699 aa19.47■□□□□ 0.71
PCCB-210ENST00000471595 CHIC1Q5VXU3 224 aa19.43■□□□□ 0.7
PCCB-210ENST00000471595 ATP1B4Q9UN42 357 aaPredicted RBP19.3■□□□□ 0.68
PCCB-210ENST00000471595 ERICH6Q7L0X2 663 aa19.23■□□□□ 0.67
PCCB-210ENST00000471595 LOC105371045A0A1W2PR82 267 aa19.22■□□□□ 0.67
PCCB-210ENST00000471595 PPARGC1BQ86YN6 1023 aaKnown RBP19.22■□□□□ 0.67
PCCB-210ENST00000471595 MYT1Q01538 1121 aa19.18■□□□□ 0.66
PCCB-210ENST00000471595 NEFLP07196 543 aa19.17■□□□□ 0.66
PCCB-210ENST00000471595 YTHDC1Q96MU7 727 aaKnown RBP19.16■□□□□ 0.66
PCCB-210ENST00000471595 HNRNPUL2Q1KMD3 747 aaKnown RBP18.87■□□□□ 0.61
PCCB-210ENST00000471595 ITGAEP38570 1179 aa18.82■□□□□ 0.6
PCCB-210ENST00000471595 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.77■□□□□ 0.6
PCCB-210ENST00000471595 DIEXFQ68CQ4 756 aaKnown RBP18.75■□□□□ 0.59
PCCB-210ENST00000471595 ABCC9O60706 1549 aa18.66■□□□□ 0.58
PCCB-210ENST00000471595 ZCCHC6Q5VYS8 1495 aaKnown RBP18.57■□□□□ 0.56
PCCB-210ENST00000471595 POLR3GLQ9BT43 218 aa18.51■□□□□ 0.55
PCCB-210ENST00000471595 PABPN1Q86U42 306 aaKnown RBP eCLIP18.47■□□□□ 0.55
PCCB-210ENST00000471595 FAM50AQ14320 339 aaKnown RBP18.46■□□□□ 0.55
PCCB-210ENST00000471595 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
PCCB-210ENST00000471595 DAXXQ9UER7 740 aaPredicted RBP18.44■□□□□ 0.54
PCCB-210ENST00000471595 ZNF316A6NFI3 1004 aaPredicted RBP18.4■□□□□ 0.54
PCCB-210ENST00000471595 CSRNP3Q8WYN3 585 aa18.37■□□□□ 0.53
PCCB-210ENST00000471595 CCDC180Q9P1Z9 1646 aa18.37■□□□□ 0.53
PCCB-210ENST00000471595 MYT1LQ9UL68 1186 aa18.36■□□□□ 0.53
PCCB-210ENST00000471595 GTF3C3Q9Y5Q9 886 aa18.36■□□□□ 0.53
PCCB-210ENST00000471595 NEUROD1Q13562 356 aa18.3■□□□□ 0.52
PCCB-210ENST00000471595 TRIM52Q96A61 297 aa18.29■□□□□ 0.52
PCCB-210ENST00000471595 SCRIBQ14160 1630 aa18.27■□□□□ 0.52
PCCB-210ENST00000471595 CNGB1Q14028 1251 aaPredicted RBP18.26■□□□□ 0.51
PCCB-210ENST00000471595 ANP32CO43423 234 aa18.26■□□□□ 0.51
PCCB-210ENST00000471595 ACIN1Q9UKV3 1341 aaKnown RBP18.24■□□□□ 0.51
PCCB-210ENST00000471595 RTL5Q5HYW3 569 aaPredicted RBP18.15■□□□□ 0.5
PCCB-210ENST00000471595 BCANQ96GW7 911 aa18.08■□□□□ 0.49
PCCB-210ENST00000471595 CLSPNQ9HAW4 1339 aa18.08■□□□□ 0.48
PCCB-210ENST00000471595 CDK11AQ9UQ88 783 aaPredicted RBP18.07■□□□□ 0.48
PCCB-210ENST00000471595 SLC4A1APQ9BWU0 796 aaKnown RBP18.04■□□□□ 0.48
PCCB-210ENST00000471595 ZNF326Q5BKZ1 582 aaKnown RBP17.98■□□□□ 0.47
PCCB-210ENST00000471595 P3H3Q8IVL6 736 aa17.98■□□□□ 0.47
PCCB-210ENST00000471595 MYO15BQ96JP2 1530 aa17.96■□□□□ 0.47
PCCB-210ENST00000471595 RSF1Q96T23 1441 aaPredicted RBP17.9■□□□□ 0.46
PCCB-210ENST00000471595 TONSLQ96HA7 1378 aa17.88■□□□□ 0.45
PCCB-210ENST00000471595 EEA1Q15075 1411 aa17.88■□□□□ 0.45
PCCB-210ENST00000471595 FBLN2P98095 1184 aa17.85■□□□□ 0.45
PCCB-210ENST00000471595 CLIP1P30622 1438 aa17.81■□□□□ 0.44
PCCB-210ENST00000471595 RB1CC1Q8TDY2 1594 aa17.79■□□□□ 0.44
PCCB-210ENST00000471595 GOLGA3Q08378 1498 aa17.77■□□□□ 0.44
PCCB-210ENST00000471595 ARID3CA6NKF2 412 aa17.76■□□□□ 0.43
PCCB-210ENST00000471595 FKBP8Q14318 412 aa17.75■□□□□ 0.43
PCCB-210ENST00000471595 CEP162Q5TB80 1403 aa17.75■□□□□ 0.43
PCCB-210ENST00000471595 ANP32AP39687 249 aaKnown RBP17.74■□□□□ 0.43
PCCB-210ENST00000471595 NACADO15069 1562 aa17.74■□□□□ 0.43
PCCB-210ENST00000471595 DDX10Q13206 875 aaKnown RBP17.73■□□□□ 0.43
PCCB-210ENST00000471595 ZNF777Q9ULD5 760 aaPredicted RBP17.73■□□□□ 0.43
PCCB-210ENST00000471595 CANXP27824 592 aaKnown RBP17.7■□□□□ 0.42
PCCB-210ENST00000471595 HNRNPUQ00839 825 aaKnown RBP eCLIP17.68■□□□□ 0.42
PCCB-210ENST00000471595 ZBTB47Q9UFB7 747 aaPredicted RBP17.68■□□□□ 0.42
PCCB-210ENST00000471595 SCAF1Q9H7N4 1312 aaKnown RBP17.68■□□□□ 0.42
PCCB-210ENST00000471595 TNIKQ9UKE5 1360 aa17.67■□□□□ 0.42
PCCB-210ENST00000471595 MIER1Q8N108 512 aa17.65■□□□□ 0.42
PCCB-210ENST00000471595 WRNQ14191 1432 aaPredicted RBP eCLIP17.63■□□□□ 0.41
PCCB-210ENST00000471595 MTUS2Q5JR59 1369 aa17.62■□□□□ 0.41
PCCB-210ENST00000471595 NEFMP07197 916 aa17.61■□□□□ 0.41
PCCB-210ENST00000471595 CEP164Q9UPV0 1460 aa17.6■□□□□ 0.41
PCCB-210ENST00000471595 FAM9BQ8IZU0 186 aa17.58■□□□□ 0.4
PCCB-210ENST00000471595 CHIC2Q9UKJ5 165 aa17.55■□□□□ 0.4
PCCB-210ENST00000471595 BAZ1AQ9NRL2 1556 aaPredicted RBP17.55■□□□□ 0.4
PCCB-210ENST00000471595 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
PCCB-210ENST00000471595 NPM2Q86SE8 214 aaKnown RBP17.5■□□□□ 0.39
PCCB-210ENST00000471595 TMC1Q8TDI8 760 aa17.5■□□□□ 0.39
PCCB-210ENST00000471595 KIF27Q86VH2 1401 aa17.5■□□□□ 0.39
PCCB-210ENST00000471595 MRS2Q9HD23 443 aa17.48■□□□□ 0.39
PCCB-210ENST00000471595 EIF4G2P78344 907 aaKnown RBP eCLIP17.47■□□□□ 0.39
PCCB-210ENST00000471595 CCDC136Q96JN2 1154 aa17.46■□□□□ 0.38
PCCB-210ENST00000471595 TSPY4P0CV99 314 aa17.45■□□□□ 0.38
PCCB-210ENST00000471595 TSPY10P0CW01 314 aa17.45■□□□□ 0.38
PCCB-210ENST00000471595 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.42■□□□□ 0.38
PCCB-210ENST00000471595 UPF2Q9HAU5 1272 aaKnown RBP17.39■□□□□ 0.37
PCCB-210ENST00000471595 CECR2Q9BXF3 1484 aa17.39■□□□□ 0.37
PCCB-210ENST00000471595 RRP7BPQ9NSQ0 103 aa17.37■□□□□ 0.37
PCCB-210ENST00000471595 HIRIP3Q9BW71 556 aaPredicted RBP17.36■□□□□ 0.37
PCCB-210ENST00000471595 WDR43Q15061 677 aaKnown RBP eCLIP17.35■□□□□ 0.37
PCCB-210ENST00000471595 CHGAP10645 457 aaKnown RBP17.34■□□□□ 0.37
PCCB-210ENST00000471595 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms