RNA–Protein interactions for RNA: ENST00000483763.5

CDC42SE1-204, Transcript of CDC42 small effector 1, humanhuman

TSL 1 (best)

Gene CDC42SE1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-204ENST00000483763 NISCHQ9Y2I1 1504 aa19.65■□□□□ 0.74
CDC42SE1-204ENST00000483763 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
CDC42SE1-204ENST00000483763 ABCC9O60706 1549 aa16.79■□□□□ 0.28
CDC42SE1-204ENST00000483763 ZCCHC6Q5VYS8 1495 aaKnown RBP16.52■□□□□ 0.24
CDC42SE1-204ENST00000483763 DCAF8L2P0C7V8 631 aa16.35■□□□□ 0.21
CDC42SE1-204ENST00000483763 SHROOM4Q9ULL8 1493 aa16.32■□□□□ 0.2
CDC42SE1-204ENST00000483763 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
CDC42SE1-204ENST00000483763 MYO15BQ96JP2 1530 aa15.88■□□□□ 0.13
CDC42SE1-204ENST00000483763 RB1CC1Q8TDY2 1594 aa15.86■□□□□ 0.13
CDC42SE1-204ENST00000483763 NACADO15069 1562 aa15.86■□□□□ 0.13
CDC42SE1-204ENST00000483763 PABPN1Q86U42 306 aaKnown RBP eCLIP15.84■□□□□ 0.13
CDC42SE1-204ENST00000483763 SUPT5HO00267 1087 aaKnown RBP15.77■□□□□ 0.11
CDC42SE1-204ENST00000483763 SCRIBQ14160 1630 aa15.74■□□□□ 0.11
CDC42SE1-204ENST00000483763 UNC13AQ9UPW8 1703 aa15.64■□□□□ 0.09
CDC42SE1-204ENST00000483763 DNAJC5BQ9UF47 199 aa15.61■□□□□ 0.09
CDC42SE1-204ENST00000483763 BICRAQ9NZM4 1560 aa15.5■□□□□ 0.07
CDC42SE1-204ENST00000483763 RSF1Q96T23 1441 aaPredicted RBP15.37■□□□□ 0.05
CDC42SE1-204ENST00000483763 CECR2Q9BXF3 1484 aa15.36■□□□□ 0.05
CDC42SE1-204ENST00000483763 MROH2BQ7Z745 1585 aa15.25■□□□□ 0.03
CDC42SE1-204ENST00000483763 CHIC1Q5VXU3 224 aa15.14■□□□□ 0.01
CDC42SE1-204ENST00000483763 WIZO95785 1651 aa15.12■□□□□ 0.01
CDC42SE1-204ENST00000483763 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
CDC42SE1-204ENST00000483763 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
CDC42SE1-204ENST00000483763 CC2D2AQ9P2K1 1620 aa15.07■□□□□ 0
CDC42SE1-204ENST00000483763 SMARCA4P51532 1647 aa15.05■□□□□ -0
CDC42SE1-204ENST00000483763 TOP2AP11388 1531 aaKnown RBP14.88□□□□□ -0.03
CDC42SE1-204ENST00000483763 PEG3Q9GZU2 1588 aa14.82□□□□□ -0.04
CDC42SE1-204ENST00000483763 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
CDC42SE1-204ENST00000483763 ATAD2BQ9ULI0 1458 aa14.81□□□□□ -0.04
CDC42SE1-204ENST00000483763 SMARCA2P51531 1590 aa14.79□□□□□ -0.04
CDC42SE1-204ENST00000483763 TRIM41Q8WV44 630 aa14.74□□□□□ -0.05
CDC42SE1-204ENST00000483763 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
CDC42SE1-204ENST00000483763 LOC105371045A0A1W2PR82 267 aa14.66□□□□□ -0.06
CDC42SE1-204ENST00000483763 NCAPD3P42695 1498 aa14.64□□□□□ -0.07
CDC42SE1-204ENST00000483763 HMGXB3Q12766 1538 aa14.61□□□□□ -0.07
CDC42SE1-204ENST00000483763 ABCC8Q09428 1581 aa14.59□□□□□ -0.07
CDC42SE1-204ENST00000483763 FAM9AQ8IZU1 332 aaPredicted RBP14.58□□□□□ -0.08
CDC42SE1-204ENST00000483763 NESP48681 1621 aa14.55□□□□□ -0.08
CDC42SE1-204ENST00000483763 EHMT2Q96KQ7 1210 aa14.44□□□□□ -0.1
CDC42SE1-204ENST00000483763 WRNQ14191 1432 aaPredicted RBP eCLIP14.42□□□□□ -0.1
CDC42SE1-204ENST00000483763 SOGA1O94964 1423 aa14.38□□□□□ -0.11
CDC42SE1-204ENST00000483763 SYNJ1O43426 1573 aa14.37□□□□□ -0.11
CDC42SE1-204ENST00000483763 ERCC6Q03468 1493 aa14.37□□□□□ -0.11
CDC42SE1-204ENST00000483763 CFTRP13569 1480 aa14.36□□□□□ -0.11
CDC42SE1-204ENST00000483763 RUSC2Q8N2Y8 1516 aa14.34□□□□□ -0.11
CDC42SE1-204ENST00000483763 CADPSQ9ULU8 1353 aa14.3□□□□□ -0.12
CDC42SE1-204ENST00000483763 KIF21AQ7Z4S6 1674 aa14.25□□□□□ -0.13
CDC42SE1-204ENST00000483763 CSRNP3Q8WYN3 585 aa14.24□□□□□ -0.13
CDC42SE1-204ENST00000483763 TOP2BQ02880 1626 aa14.24□□□□□ -0.13
CDC42SE1-204ENST00000483763 CUX1P39880 1505 aa14.22□□□□□ -0.13
CDC42SE1-204ENST00000483763 PRDM2Q13029 1718 aa14.22□□□□□ -0.13
CDC42SE1-204ENST00000483763 LAMC3Q9Y6N6 1575 aa14.21□□□□□ -0.13
CDC42SE1-204ENST00000483763 EEA1Q15075 1411 aa14.2□□□□□ -0.14
CDC42SE1-204ENST00000483763 BIVM-ERCC5R4GMW8 1640 aa14.19□□□□□ -0.14
CDC42SE1-204ENST00000483763 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
CDC42SE1-204ENST00000483763 FANCD2Q9BXW9 1451 aa14.15□□□□□ -0.14
CDC42SE1-204ENST00000483763 PCGF6Q9BYE7 350 aa14.11□□□□□ -0.15
CDC42SE1-204ENST00000483763 THOC2Q8NI27 1593 aaKnown RBP14.11□□□□□ -0.15
CDC42SE1-204ENST00000483763 UBTFP17480 764 aaKnown RBP14.1□□□□□ -0.15
CDC42SE1-204ENST00000483763 TNIKQ9UKE5 1360 aa14.08□□□□□ -0.16
CDC42SE1-204ENST00000483763 CEP164Q9UPV0 1460 aa14.07□□□□□ -0.16
CDC42SE1-204ENST00000483763 GOLGA3Q08378 1498 aa14.07□□□□□ -0.16
CDC42SE1-204ENST00000483763 RAPGEF2Q9Y4G8 1499 aa14.05□□□□□ -0.16
CDC42SE1-204ENST00000483763 CEP162Q5TB80 1403 aa14.05□□□□□ -0.16
CDC42SE1-204ENST00000483763 CUX2O14529 1486 aa14.04□□□□□ -0.16
CDC42SE1-204ENST00000483763 MRC2Q9UBG0 1479 aa14.04□□□□□ -0.16
CDC42SE1-204ENST00000483763 URB2Q14146 1524 aaKnown RBP14.04□□□□□ -0.16
CDC42SE1-204ENST00000483763 FGD5Q6ZNL6 1462 aa14.03□□□□□ -0.16
CDC42SE1-204ENST00000483763 KIF21BO75037 1637 aa14.03□□□□□ -0.16
CDC42SE1-204ENST00000483763 KIF27Q86VH2 1401 aa14.02□□□□□ -0.17
CDC42SE1-204ENST00000483763 PRXQ9BXM0 1461 aa13.99□□□□□ -0.17
CDC42SE1-204ENST00000483763 PPARGC1BQ86YN6 1023 aaKnown RBP13.99□□□□□ -0.17
CDC42SE1-204ENST00000483763 TOPBP1Q92547 1522 aa13.99□□□□□ -0.17
CDC42SE1-204ENST00000483763 DNMBPQ6XZF7 1577 aa13.99□□□□□ -0.17
CDC42SE1-204ENST00000483763 TRIM26Q12899 539 aaPredicted RBP13.97□□□□□ -0.17
CDC42SE1-204ENST00000483763 RAD54L2Q9Y4B4 1467 aa13.96□□□□□ -0.17
CDC42SE1-204ENST00000483763 WDR62O43379 1518 aa13.95□□□□□ -0.18
CDC42SE1-204ENST00000483763 POLA1P09884 1462 aaPredicted RBP13.95□□□□□ -0.18
CDC42SE1-204ENST00000483763 IGF1RP08069 1367 aa13.95□□□□□ -0.18
CDC42SE1-204ENST00000483763 RANGAP1P46060 587 aaPredicted RBP13.93□□□□□ -0.18
CDC42SE1-204ENST00000483763 ERICH3Q5RHP9 1530 aa13.9□□□□□ -0.18
CDC42SE1-204ENST00000483763 CLIP1P30622 1438 aa13.9□□□□□ -0.18
CDC42SE1-204ENST00000483763 DNAJC5Q9H3Z4 198 aa13.89□□□□□ -0.19
CDC42SE1-204ENST00000483763 ZNF608Q9ULD9 1512 aaPredicted RBP13.89□□□□□ -0.19
CDC42SE1-204ENST00000483763 ABCA10Q8WWZ4 1543 aa13.88□□□□□ -0.19
CDC42SE1-204ENST00000483763 CARMIL1Q5VZK9 1371 aa13.85□□□□□ -0.19
CDC42SE1-204ENST00000483763 SLC24A1O60721 1099 aa13.84□□□□□ -0.19
CDC42SE1-204ENST00000483763 TTBK1Q5TCY1 1321 aaPredicted RBP13.83□□□□□ -0.19
CDC42SE1-204ENST00000483763 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.2
CDC42SE1-204ENST00000483763 AQRO60306 1485 aaKnown RBP eCLIP13.83□□□□□ -0.21e-6■■□□□ 12.2
CDC42SE1-204ENST00000483763 FBLN2P98095 1184 aa13.79□□□□□ -0.2
CDC42SE1-204ENST00000483763 VPS8Q8N3P4 1428 aa13.78□□□□□ -0.2
CDC42SE1-204ENST00000483763 WDR97A6NE52 1622 aa13.77□□□□□ -0.2
CDC42SE1-204ENST00000483763 HRCP23327 699 aa13.77□□□□□ -0.21
CDC42SE1-204ENST00000483763 TARBP1Q13395 1621 aaKnown RBP13.76□□□□□ -0.21
CDC42SE1-204ENST00000483763 ARAP1Q96P48 1450 aa13.75□□□□□ -0.21
CDC42SE1-204ENST00000483763 GAPVD1Q14C86 1478 aa13.74□□□□□ -0.21
CDC42SE1-204ENST00000483763 IFT140Q96RY7 1462 aa13.74□□□□□ -0.21
CDC42SE1-204ENST00000483763 ABCA5Q8WWZ7 1642 aa13.73□□□□□ -0.21
CDC42SE1-204ENST00000483763 ARHGAP35Q9NRY4 1499 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms