Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA2Q9Y261 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.52■□□□□ 0.72
FOXA2Q9Y261 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA2Q9Y261 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
FOXA2Q9Y261 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
FOXA2Q9Y261 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.52■□□□□ 0.72
FOXA2Q9Y261 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
FOXA2Q9Y261 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA2Q9Y261 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
FOXA2Q9Y261 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
FOXA2Q9Y261 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.52■□□□□ 0.71
FOXA2Q9Y261 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
FOXA2Q9Y261 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
FOXA2Q9Y261 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA2Q9Y261 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA2Q9Y261 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA2Q9Y261 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.5■□□□□ 0.71
FOXA2Q9Y261 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXA2Q9Y261 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA2Q9Y261 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXA2Q9Y261 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.48■□□□□ 0.71
FOXA2Q9Y261 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA2Q9Y261 AL359258.2-201ENST00000564063 1566 ntBASIC19.47■□□□□ 0.71
FOXA2Q9Y261 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA2Q9Y261 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA2Q9Y261 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXA2Q9Y261 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
FOXA2Q9Y261 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
FOXA2Q9Y261 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 AC022413.1-201ENST00000624602 984 ntBASIC19.43■□□□□ 0.7
FOXA2Q9Y261 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA2Q9Y261 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.42■□□□□ 0.7
FOXA2Q9Y261 AC060814.1-201ENST00000554326 538 ntBASIC19.42■□□□□ 0.7
FOXA2Q9Y261 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 AC142381.3-201ENST00000568208 1670 ntBASIC19.42■□□□□ 0.7
FOXA2Q9Y261 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXA2Q9Y261 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
FOXA2Q9Y261 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA2Q9Y261 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.4■□□□□ 0.7
FOXA2Q9Y261 GPX1-201ENST00000419349 1106 ntBASIC19.4■□□□□ 0.7
FOXA2Q9Y261 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA2Q9Y261 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
FOXA2Q9Y261 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA2Q9Y261 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms