Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM39Q9HCM9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.97■■□□□ 1.43
TRIM39Q9HCM9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM39Q9HCM9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
TRIM39Q9HCM9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
TRIM39Q9HCM9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
TRIM39Q9HCM9 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.96■■□□□ 1.43
TRIM39Q9HCM9 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM39Q9HCM9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM39Q9HCM9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM39Q9HCM9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM39Q9HCM9 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRIM39Q9HCM9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRIM39Q9HCM9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.95■■□□□ 1.42
TRIM39Q9HCM9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.94■■□□□ 1.42
TRIM39Q9HCM9 AC004987.1-201ENST00000428627 508 ntBASIC23.94■■□□□ 1.42
TRIM39Q9HCM9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
TRIM39Q9HCM9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 ATP5G2P3-201ENST00000429083 425 ntBASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.93■■□□□ 1.42
TRIM39Q9HCM9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 DUX4L9-201ENST00000449051 1259 ntBASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 SPCS2P3-201ENST00000500401 656 ntBASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
TRIM39Q9HCM9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 TSPY13P-201ENST00000338964 914 ntBASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
TRIM39Q9HCM9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.9■■□□□ 1.42
TRIM39Q9HCM9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
TRIM39Q9HCM9 AC018755.3-202ENST00000596210 929 ntBASIC23.9■■□□□ 1.42
TRIM39Q9HCM9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
TRIM39Q9HCM9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TRIM39Q9HCM9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
TRIM39Q9HCM9 AL033527.3-201ENST00000566366 1196 ntBASIC23.89■■□□□ 1.41
TRIM39Q9HCM9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.89■■□□□ 1.41
TRIM39Q9HCM9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
TRIM39Q9HCM9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM39Q9HCM9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM39Q9HCM9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.88■■□□□ 1.41
TRIM39Q9HCM9 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM39Q9HCM9 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TRIM39Q9HCM9 MIR6765-201ENST00000614092 87 ntBASIC23.87■■□□□ 1.41
TRIM39Q9HCM9 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
TRIM39Q9HCM9 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM39Q9HCM9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM39Q9HCM9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC23.86■■□□□ 1.41
TRIM39Q9HCM9 DUX4L18-201ENST00000553347 1267 ntBASIC23.86■■□□□ 1.41
TRIM39Q9HCM9 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.86■■□□□ 1.41
TRIM39Q9HCM9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM39Q9HCM9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM39Q9HCM9 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM39Q9HCM9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.85■■□□□ 1.41
TRIM39Q9HCM9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM39Q9HCM9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM39Q9HCM9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.83■■□□□ 1.41
TRIM39Q9HCM9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.83■■□□□ 1.4
TRIM39Q9HCM9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms