Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
FOXA1P55317 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
FOXA1P55317 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
FOXA1P55317 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.45■■□□□ 1.34
FOXA1P55317 AC093323.1-202ENST00000635031 2045 ntBASIC23.45■■□□□ 1.34
FOXA1P55317 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
FOXA1P55317 MIR3648-2-201ENST00000581792 180 ntBASIC23.44■■□□□ 1.34
FOXA1P55317 MIR3648-1-201ENST00000615959 180 ntBASIC23.44■■□□□ 1.34
FOXA1P55317 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.44■■□□□ 1.34
FOXA1P55317 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
FOXA1P55317 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
FOXA1P55317 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
FOXA1P55317 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.43■■□□□ 1.34
FOXA1P55317 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
FOXA1P55317 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
FOXA1P55317 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
FOXA1P55317 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.43■■□□□ 1.34
FOXA1P55317 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
FOXA1P55317 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
FOXA1P55317 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.43■■□□□ 1.34
FOXA1P55317 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
FOXA1P55317 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.43■■□□□ 1.34
FOXA1P55317 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
FOXA1P55317 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
FOXA1P55317 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
FOXA1P55317 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.42■■□□□ 1.34
FOXA1P55317 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
FOXA1P55317 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.42■■□□□ 1.34
FOXA1P55317 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.42■■□□□ 1.34
FOXA1P55317 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
FOXA1P55317 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
FOXA1P55317 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC23.41■■□□□ 1.34
FOXA1P55317 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
FOXA1P55317 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
FOXA1P55317 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
FOXA1P55317 AC022211.4-201ENST00000625094 2161 ntBASIC23.4■■□□□ 1.34
FOXA1P55317 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
FOXA1P55317 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.4■■□□□ 1.34
FOXA1P55317 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
FOXA1P55317 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.4■■□□□ 1.34
FOXA1P55317 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
FOXA1P55317 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
FOXA1P55317 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
FOXA1P55317 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.39■■□□□ 1.34
FOXA1P55317 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.38■■□□□ 1.33
FOXA1P55317 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.38■■□□□ 1.33
FOXA1P55317 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
FOXA1P55317 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.38■■□□□ 1.33
FOXA1P55317 AC016575.1-201ENST00000607026 382 ntBASIC23.38■■□□□ 1.33
FOXA1P55317 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
FOXA1P55317 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
FOXA1P55317 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
FOXA1P55317 AC142381.3-201ENST00000568208 1670 ntBASIC23.38■■□□□ 1.33
FOXA1P55317 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.38■■□□□ 1.33
FOXA1P55317 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
FOXA1P55317 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
FOXA1P55317 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
FOXA1P55317 AC138932.3-201ENST00000567634 1902 ntBASIC23.37■■□□□ 1.33
FOXA1P55317 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.36■■□□□ 1.33
FOXA1P55317 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
FOXA1P55317 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
FOXA1P55317 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
FOXA1P55317 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.35■■□□□ 1.33
FOXA1P55317 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
FOXA1P55317 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.35■■□□□ 1.33
FOXA1P55317 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
FOXA1P55317 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
FOXA1P55317 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.35■■□□□ 1.33
FOXA1P55317 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
FOXA1P55317 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.34■■□□□ 1.33
FOXA1P55317 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
FOXA1P55317 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.34■■□□□ 1.33
FOXA1P55317 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
FOXA1P55317 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
FOXA1P55317 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
FOXA1P55317 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
FOXA1P55317 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
FOXA1P55317 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.33■■□□□ 1.33
FOXA1P55317 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
FOXA1P55317 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
FOXA1P55317 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
FOXA1P55317 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.32■■□□□ 1.32
FOXA1P55317 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
FOXA1P55317 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXA1P55317 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
FOXA1P55317 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXA1P55317 AC126177.7-201ENST00000547904 679 ntBASIC23.31■■□□□ 1.32
FOXA1P55317 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.31■■□□□ 1.32
FOXA1P55317 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXA1P55317 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.31■■□□□ 1.32
FOXA1P55317 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
FOXA1P55317 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXA1P55317 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
FOXA1P55317 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms