Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1BO60663 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LMX1BO60663 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1BO60663 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1BO60663 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1BO60663 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.2■□□□□ 0.98
LMX1BO60663 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
LMX1BO60663 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LMX1BO60663 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.19■□□□□ 0.98
LMX1BO60663 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
LMX1BO60663 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.19■□□□□ 0.98
LMX1BO60663 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LMX1BO60663 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.19■□□□□ 0.98
LMX1BO60663 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
LMX1BO60663 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LMX1BO60663 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.18■□□□□ 0.98
LMX1BO60663 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 MIR219A2-201ENST00000608502 1504 ntBASIC21.18■□□□□ 0.98
LMX1BO60663 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LMX1BO60663 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
LMX1BO60663 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1BO60663 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.17■□□□□ 0.98
LMX1BO60663 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1BO60663 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LMX1BO60663 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LMX1BO60663 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
LMX1BO60663 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LMX1BO60663 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LMX1BO60663 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.15■□□□□ 0.98
LMX1BO60663 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LMX1BO60663 AC010501.1-201ENST00000606270 1962 ntBASIC21.14■□□□□ 0.98
LMX1BO60663 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LMX1BO60663 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LMX1BO60663 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.14■□□□□ 0.97
LMX1BO60663 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LMX1BO60663 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.14■□□□□ 0.97
LMX1BO60663 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1BO60663 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1BO60663 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.13■□□□□ 0.97
LMX1BO60663 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LMX1BO60663 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.13■□□□□ 0.97
LMX1BO60663 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1BO60663 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.13■□□□□ 0.97
LMX1BO60663 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1BO60663 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1BO60663 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LMX1BO60663 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1BO60663 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1BO60663 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LMX1BO60663 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.12■□□□□ 0.97
LMX1BO60663 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
LMX1BO60663 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1BO60663 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LMX1BO60663 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LMX1BO60663 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LMX1BO60663 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LMX1BO60663 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.1■□□□□ 0.97
LMX1BO60663 AL033527.3-201ENST00000566366 1196 ntBASIC21.1■□□□□ 0.97
LMX1BO60663 AC148477.6-201ENST00000623746 465 ntBASIC21.1■□□□□ 0.97
LMX1BO60663 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LMX1BO60663 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1BO60663 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LMX1BO60663 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LMX1BO60663 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1BO60663 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LMX1BO60663 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.08■□□□□ 0.97
LMX1BO60663 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1BO60663 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
LMX1BO60663 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1BO60663 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.08■□□□□ 0.97
LMX1BO60663 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1BO60663 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LMX1BO60663 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
LMX1BO60663 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.07■□□□□ 0.96
LMX1BO60663 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1BO60663 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
LMX1BO60663 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LMX1BO60663 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.07■□□□□ 0.96
LMX1BO60663 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
LMX1BO60663 AL359258.2-201ENST00000564063 1566 ntBASIC21.06■□□□□ 0.96
LMX1BO60663 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LMX1BO60663 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
LMX1BO60663 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LMX1BO60663 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms