Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A5A8TX70 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A5A8TX70 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL6A5A8TX70 AL512631.2-201ENST00000604634 923 ntBASIC19.38■□□□□ 0.69
COL6A5A8TX70 AL356740.2-201ENST00000601559 647 ntBASIC19.37■□□□□ 0.69
COL6A5A8TX70 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL6A5A8TX70 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A5A8TX70 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A5A8TX70 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A5A8TX70 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A5A8TX70 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
COL6A5A8TX70 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A5A8TX70 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.35■□□□□ 0.69
COL6A5A8TX70 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A5A8TX70 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A5A8TX70 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A5A8TX70 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.35■□□□□ 0.69
COL6A5A8TX70 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A5A8TX70 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A5A8TX70 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A5A8TX70 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A5A8TX70 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.34■□□□□ 0.69
COL6A5A8TX70 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.33■□□□□ 0.69
COL6A5A8TX70 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL6A5A8TX70 PBX2P1-201ENST00000493219 1291 ntBASIC19.33■□□□□ 0.69
COL6A5A8TX70 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.33■□□□□ 0.69
COL6A5A8TX70 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.33■□□□□ 0.69
COL6A5A8TX70 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.33■□□□□ 0.69
COL6A5A8TX70 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.33■□□□□ 0.69
COL6A5A8TX70 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
COL6A5A8TX70 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A5A8TX70 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A5A8TX70 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A5A8TX70 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A5A8TX70 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A5A8TX70 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A5A8TX70 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A5A8TX70 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.32■□□□□ 0.68
COL6A5A8TX70 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A5A8TX70 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A5A8TX70 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A5A8TX70 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A5A8TX70 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A5A8TX70 MIR6724-1-201ENST00000616420 92 ntBASIC19.31■□□□□ 0.68
COL6A5A8TX70 MIR6724-2-201ENST00000616483 92 ntBASIC19.31■□□□□ 0.68
COL6A5A8TX70 MIR6724-4-201ENST00000617390 92 ntBASIC19.31■□□□□ 0.68
COL6A5A8TX70 MIR6724-3-201ENST00000622482 92 ntBASIC19.31■□□□□ 0.68
COL6A5A8TX70 RARRES2P11-201ENST00000635158 484 ntBASIC19.31■□□□□ 0.68
COL6A5A8TX70 ESRRAP2-201ENST00000418437 1549 ntBASIC19.31■□□□□ 0.68
COL6A5A8TX70 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A5A8TX70 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A5A8TX70 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.3■□□□□ 0.68
COL6A5A8TX70 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A5A8TX70 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
COL6A5A8TX70 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL6A5A8TX70 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A5A8TX70 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A5A8TX70 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A5A8TX70 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL6A5A8TX70 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COL6A5A8TX70 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A5A8TX70 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.29■□□□□ 0.68
COL6A5A8TX70 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A5A8TX70 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A5A8TX70 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A5A8TX70 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A5A8TX70 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.28■□□□□ 0.68
COL6A5A8TX70 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A5A8TX70 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A5A8TX70 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A5A8TX70 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL6A5A8TX70 AC010997.5-201ENST00000609182 354 ntBASIC19.27■□□□□ 0.68
COL6A5A8TX70 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.26■□□□□ 0.67
COL6A5A8TX70 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A5A8TX70 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL6A5A8TX70 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A5A8TX70 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A5A8TX70 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A5A8TX70 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.25■□□□□ 0.67
COL6A5A8TX70 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A5A8TX70 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
COL6A5A8TX70 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.24■□□□□ 0.67
COL6A5A8TX70 EDA-201ENST00000338901 1233 ntBASIC19.24■□□□□ 0.67
COL6A5A8TX70 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A5A8TX70 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A5A8TX70 AC105265.2-201ENST00000467189 838 ntBASIC19.24■□□□□ 0.67
COL6A5A8TX70 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.24■□□□□ 0.67
COL6A5A8TX70 AL355001.2-201ENST00000620617 1191 ntBASIC19.24■□□□□ 0.67
COL6A5A8TX70 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL6A5A8TX70 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A5A8TX70 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A5A8TX70 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.23■□□□□ 0.67
COL6A5A8TX70 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A5A8TX70 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A5A8TX70 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms