Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 AC139795.1-202ENST00000500444 432 ntBASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC28.01■■■□□ 2.07
SMCHD1A6NHR9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC28■■■□□ 2.07
SMCHD1A6NHR9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28■■■□□ 2.07
SMCHD1A6NHR9 MIR4508-201ENST00000584178 70 ntBASIC28■■■□□ 2.07
SMCHD1A6NHR9 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SMCHD1A6NHR9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMCHD1A6NHR9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMCHD1A6NHR9 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMCHD1A6NHR9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMCHD1A6NHR9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC27.99■■■□□ 2.07
SMCHD1A6NHR9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.99■■■□□ 2.07
SMCHD1A6NHR9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.98■■■□□ 2.07
SMCHD1A6NHR9 AC142472.1-201ENST00000612013 1741 ntBASIC27.98■■■□□ 2.07
SMCHD1A6NHR9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SMCHD1A6NHR9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC27.98■■■□□ 2.07
SMCHD1A6NHR9 AC103724.3-201ENST00000564481 992 ntBASIC27.97■■■□□ 2.07
SMCHD1A6NHR9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 BHLHE23-202ENST00000612929 1109 ntBASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 AC074183.2-201ENST00000623112 922 ntBASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMCHD1A6NHR9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
SMCHD1A6NHR9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.95■■■□□ 2.06
SMCHD1A6NHR9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.06
SMCHD1A6NHR9 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SMCHD1A6NHR9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.94■■■□□ 2.06
SMCHD1A6NHR9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
SMCHD1A6NHR9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
SMCHD1A6NHR9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SMCHD1A6NHR9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC27.94■■■□□ 2.06
SMCHD1A6NHR9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC27.93■■■□□ 2.06
SMCHD1A6NHR9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC27.93■■■□□ 2.06
SMCHD1A6NHR9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.93■■■□□ 2.06
SMCHD1A6NHR9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SMCHD1A6NHR9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 HES6-204ENST00000409182 863 ntTSL 2 BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 AC103834.1-201ENST00000520383 144 ntBASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
SMCHD1A6NHR9 AC131212.1-201ENST00000613771 668 ntBASIC27.91■■■□□ 2.06
SMCHD1A6NHR9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.91■■■□□ 2.06
SMCHD1A6NHR9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC27.91■■■□□ 2.06
SMCHD1A6NHR9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SMCHD1A6NHR9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC27.9■■■□□ 2.06
SMCHD1A6NHR9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SMCHD1A6NHR9 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SMCHD1A6NHR9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC27.9■■■□□ 2.06
SMCHD1A6NHR9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC27.9■■■□□ 2.06
SMCHD1A6NHR9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SMCHD1A6NHR9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.89■■■□□ 2.06
SMCHD1A6NHR9 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.89■■■□□ 2.06
SMCHD1A6NHR9 AP004609.3-201ENST00000610705 1884 ntBASIC27.89■■■□□ 2.06
SMCHD1A6NHR9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC27.89■■■□□ 2.06
SMCHD1A6NHR9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.89■■■□□ 2.06
SMCHD1A6NHR9 GUSBP5-201ENST00000418136 578 ntBASIC27.89■■■□□ 2.05
SMCHD1A6NHR9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
SMCHD1A6NHR9 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
SMCHD1A6NHR9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMCHD1A6NHR9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMCHD1A6NHR9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMCHD1A6NHR9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMCHD1A6NHR9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SMCHD1A6NHR9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC27.87■■■□□ 2.05
SMCHD1A6NHR9 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC27.86■■■□□ 2.05
SMCHD1A6NHR9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
SMCHD1A6NHR9 PKM-203ENST00000389093 2279 ntTSL 5 BASIC27.85■■■□□ 2.05
SMCHD1A6NHR9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SMCHD1A6NHR9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SMCHD1A6NHR9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
SMCHD1A6NHR9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.84■■■□□ 2.05
SMCHD1A6NHR9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
SMCHD1A6NHR9 AC019069.1-201ENST00000610008 1333 ntBASIC27.84■■■□□ 2.05
SMCHD1A6NHR9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SMCHD1A6NHR9 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMCHD1A6NHR9 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMCHD1A6NHR9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SMCHD1A6NHR9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMCHD1A6NHR9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SMCHD1A6NHR9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
SMCHD1A6NHR9 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.81■■■□□ 2.04
SMCHD1A6NHR9 AC087393.1-201ENST00000582896 145 ntBASIC27.81■■■□□ 2.04
SMCHD1A6NHR9 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SMCHD1A6NHR9 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
SMCHD1A6NHR9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
SMCHD1A6NHR9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms