Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.28■■□□□ 1.16
SHANK1Q9Y566 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHANK1Q9Y566 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
SHANK1Q9Y566 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
SHANK1Q9Y566 AL031848.2-201ENST00000607670 837 ntBASIC22.26■■□□□ 1.15
SHANK1Q9Y566 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK1Q9Y566 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK1Q9Y566 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SHANK1Q9Y566 MIR935-201ENST00000401179 91 ntBASIC22.25■■□□□ 1.15
SHANK1Q9Y566 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.25■■□□□ 1.15
SHANK1Q9Y566 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK1Q9Y566 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK1Q9Y566 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK1Q9Y566 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SHANK1Q9Y566 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.24■■□□□ 1.15
SHANK1Q9Y566 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 Z92544.1-202ENST00000571933 1220 ntBASIC22.23■■□□□ 1.15
SHANK1Q9Y566 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SHANK1Q9Y566 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.22■■□□□ 1.15
SHANK1Q9Y566 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.22■■□□□ 1.15
SHANK1Q9Y566 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SHANK1Q9Y566 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC22.22■■□□□ 1.15
SHANK1Q9Y566 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.21■■□□□ 1.15
SHANK1Q9Y566 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.21■■□□□ 1.15
SHANK1Q9Y566 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.21■■□□□ 1.15
SHANK1Q9Y566 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
SHANK1Q9Y566 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
SHANK1Q9Y566 AC239859.2-201ENST00000444165 318 ntBASIC22.21■■□□□ 1.15
SHANK1Q9Y566 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.15
SHANK1Q9Y566 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.2■■□□□ 1.14
SHANK1Q9Y566 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHANK1Q9Y566 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
SHANK1Q9Y566 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.19■■□□□ 1.14
SHANK1Q9Y566 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHANK1Q9Y566 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
SHANK1Q9Y566 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC22.18■■□□□ 1.14
SHANK1Q9Y566 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.18■■□□□ 1.14
SHANK1Q9Y566 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.18■■□□□ 1.14
SHANK1Q9Y566 AC018755.3-202ENST00000596210 929 ntBASIC22.18■■□□□ 1.14
SHANK1Q9Y566 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHANK1Q9Y566 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.18■■□□□ 1.14
SHANK1Q9Y566 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK1Q9Y566 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK1Q9Y566 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK1Q9Y566 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SHANK1Q9Y566 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK1Q9Y566 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.17■■□□□ 1.14
SHANK1Q9Y566 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SHANK1Q9Y566 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK1Q9Y566 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK1Q9Y566 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.16■■□□□ 1.14
SHANK1Q9Y566 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK1Q9Y566 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
SHANK1Q9Y566 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.15■■□□□ 1.14
SHANK1Q9Y566 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK1Q9Y566 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK1Q9Y566 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK1Q9Y566 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK1Q9Y566 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK1Q9Y566 AL359504.2-201ENST00000605506 1601 ntBASIC22.14■■□□□ 1.14
SHANK1Q9Y566 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.14■■□□□ 1.13
SHANK1Q9Y566 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.14■■□□□ 1.13
SHANK1Q9Y566 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK1Q9Y566 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK1Q9Y566 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK1Q9Y566 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.14■■□□□ 1.13
SHANK1Q9Y566 AC019171.1-201ENST00000601251 1056 ntBASIC22.14■■□□□ 1.13
SHANK1Q9Y566 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.13■■□□□ 1.13
SHANK1Q9Y566 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHANK1Q9Y566 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHANK1Q9Y566 AP002414.2-202ENST00000590929 1450 ntBASIC22.12■■□□□ 1.13
SHANK1Q9Y566 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHANK1Q9Y566 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 AC087393.1-201ENST00000582896 145 ntBASIC22.11■■□□□ 1.13
SHANK1Q9Y566 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SHANK1Q9Y566 AC008406.3-201ENST00000620001 1374 ntBASIC22.1■■□□□ 1.13
SHANK1Q9Y566 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SHANK1Q9Y566 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
SHANK1Q9Y566 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
SHANK1Q9Y566 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SHANK1Q9Y566 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SHANK1Q9Y566 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
SHANK1Q9Y566 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC22.08■■□□□ 1.13
SHANK1Q9Y566 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.08■■□□□ 1.12
SHANK1Q9Y566 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SHANK1Q9Y566 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22.07■■□□□ 1.12
SHANK1Q9Y566 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms