Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.69■■□□□ 1.06
CLRN1P58418 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLRN1P58418 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLRN1P58418 AC145676.1-201ENST00000514988 2004 ntBASIC21.68■■□□□ 1.06
CLRN1P58418 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN1P58418 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.68■■□□□ 1.06
CLRN1P58418 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN1P58418 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN1P58418 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN1P58418 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN1P58418 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.68■■□□□ 1.06
CLRN1P58418 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN1P58418 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN1P58418 AC060814.1-201ENST00000554326 538 ntBASIC21.67■■□□□ 1.06
CLRN1P58418 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.67■■□□□ 1.06
CLRN1P58418 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.67■■□□□ 1.06
CLRN1P58418 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLRN1P58418 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLRN1P58418 MIR4449-201ENST00000578365 66 ntBASIC21.66■■□□□ 1.06
CLRN1P58418 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLRN1P58418 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLRN1P58418 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN1P58418 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.65■■□□□ 1.06
CLRN1P58418 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CLRN1P58418 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN1P58418 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.65■■□□□ 1.06
CLRN1P58418 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.65■■□□□ 1.06
CLRN1P58418 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CLRN1P58418 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.65■■□□□ 1.06
CLRN1P58418 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.64■■□□□ 1.06
CLRN1P58418 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLRN1P58418 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.64■■□□□ 1.05
CLRN1P58418 AC022413.1-201ENST00000624602 984 ntBASIC21.64■■□□□ 1.05
CLRN1P58418 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
CLRN1P58418 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.63■■□□□ 1.05
CLRN1P58418 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN1P58418 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CLRN1P58418 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
CLRN1P58418 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.62■■□□□ 1.05
CLRN1P58418 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN1P58418 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLRN1P58418 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLRN1P58418 AL157400.5-201ENST00000507624 621 ntBASIC21.61■■□□□ 1.05
CLRN1P58418 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLRN1P58418 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLRN1P58418 DUSP8P4-201ENST00000399538 1761 ntBASIC21.61■■□□□ 1.05
CLRN1P58418 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CLRN1P58418 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CLRN1P58418 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.6■■□□□ 1.05
CLRN1P58418 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLRN1P58418 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.6■■□□□ 1.05
CLRN1P58418 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.6■■□□□ 1.05
CLRN1P58418 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLRN1P58418 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLRN1P58418 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
CLRN1P58418 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.6■■□□□ 1.05
CLRN1P58418 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLRN1P58418 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLRN1P58418 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.59■■□□□ 1.05
CLRN1P58418 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.59■■□□□ 1.05
CLRN1P58418 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLRN1P58418 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
CLRN1P58418 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLRN1P58418 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CLRN1P58418 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.58■■□□□ 1.04
CLRN1P58418 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CLRN1P58418 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLRN1P58418 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLRN1P58418 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.58■■□□□ 1.04
CLRN1P58418 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.57■■□□□ 1.04
CLRN1P58418 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.57■■□□□ 1.04
CLRN1P58418 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.57■■□□□ 1.04
CLRN1P58418 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLRN1P58418 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLRN1P58418 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms