Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
NKX6-3A6NJ46 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.42■□□□□ 0.86
NKX6-3A6NJ46 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX6-3A6NJ46 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.41■□□□□ 0.86
NKX6-3A6NJ46 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.41■□□□□ 0.86
NKX6-3A6NJ46 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.41■□□□□ 0.86
NKX6-3A6NJ46 AC025884.2-201ENST00000553429 711 ntBASIC20.41■□□□□ 0.86
NKX6-3A6NJ46 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
NKX6-3A6NJ46 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
NKX6-3A6NJ46 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
NKX6-3A6NJ46 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
NKX6-3A6NJ46 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX6-3A6NJ46 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX6-3A6NJ46 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.38■□□□□ 0.85
NKX6-3A6NJ46 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX6-3A6NJ46 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX6-3A6NJ46 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NKX6-3A6NJ46 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 RARRES2P2-201ENST00000394842 485 ntBASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 AC007029.1-201ENST00000604183 313 ntBASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NKX6-3A6NJ46 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX6-3A6NJ46 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NKX6-3A6NJ46 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.36■□□□□ 0.85
NKX6-3A6NJ46 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX6-3A6NJ46 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
NKX6-3A6NJ46 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX6-3A6NJ46 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
NKX6-3A6NJ46 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.34■□□□□ 0.85
NKX6-3A6NJ46 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX6-3A6NJ46 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX6-3A6NJ46 RP9P-202ENST00000450133 1212 ntBASIC20.34■□□□□ 0.85
NKX6-3A6NJ46 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
NKX6-3A6NJ46 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
NKX6-3A6NJ46 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX6-3A6NJ46 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.33■□□□□ 0.85
NKX6-3A6NJ46 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NKX6-3A6NJ46 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX6-3A6NJ46 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX6-3A6NJ46 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NKX6-3A6NJ46 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.32■□□□□ 0.84
NKX6-3A6NJ46 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NKX6-3A6NJ46 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
NKX6-3A6NJ46 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 AC093536.1-201ENST00000569153 554 ntBASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
NKX6-3A6NJ46 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NKX6-3A6NJ46 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.29■□□□□ 0.84
NKX6-3A6NJ46 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.29■□□□□ 0.84
NKX6-3A6NJ46 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NKX6-3A6NJ46 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.29■□□□□ 0.84
NKX6-3A6NJ46 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms