Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA2Q9Y261 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA2Q9Y261 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
FOXA2Q9Y261 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.78■□□□□ 0.76
FOXA2Q9Y261 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA2Q9Y261 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.78■□□□□ 0.76
FOXA2Q9Y261 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA2Q9Y261 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.76■□□□□ 0.75
FOXA2Q9Y261 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA2Q9Y261 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FOXA2Q9Y261 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.76■□□□□ 0.75
FOXA2Q9Y261 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
FOXA2Q9Y261 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA2Q9Y261 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
FOXA2Q9Y261 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA2Q9Y261 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FOXA2Q9Y261 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.75■□□□□ 0.75
FOXA2Q9Y261 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.75■□□□□ 0.75
FOXA2Q9Y261 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 AC135731.1-201ENST00000569415 2548 ntBASIC19.74■□□□□ 0.75
FOXA2Q9Y261 AC020928.2-201ENST00000588717 2197 ntBASIC19.74■□□□□ 0.75
FOXA2Q9Y261 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
FOXA2Q9Y261 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.73■□□□□ 0.75
FOXA2Q9Y261 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
FOXA2Q9Y261 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 AC148477.6-201ENST00000623746 465 ntBASIC19.71■□□□□ 0.75
FOXA2Q9Y261 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
FOXA2Q9Y261 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA2Q9Y261 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
FOXA2Q9Y261 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
FOXA2Q9Y261 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.69■□□□□ 0.74
FOXA2Q9Y261 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA2Q9Y261 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXA2Q9Y261 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA2Q9Y261 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXA2Q9Y261 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXA2Q9Y261 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 MIR219A2-201ENST00000608502 1504 ntBASIC19.66■□□□□ 0.74
FOXA2Q9Y261 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 MIR4449-201ENST00000578365 66 ntBASIC19.66■□□□□ 0.74
FOXA2Q9Y261 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXA2Q9Y261 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms