Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXC2Q99958 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXC2Q99958 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.91■□□□□ 0.94
FOXC2Q99958 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.91■□□□□ 0.94
FOXC2Q99958 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
FOXC2Q99958 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
FOXC2Q99958 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXC2Q99958 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXC2Q99958 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXC2Q99958 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXC2Q99958 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.9■□□□□ 0.94
FOXC2Q99958 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXC2Q99958 MIR638-201ENST00000385237 100 ntBASIC20.89■□□□□ 0.93
FOXC2Q99958 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXC2Q99958 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXC2Q99958 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.89■□□□□ 0.93
FOXC2Q99958 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.89■□□□□ 0.93
FOXC2Q99958 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.89■□□□□ 0.93
FOXC2Q99958 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
FOXC2Q99958 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.89■□□□□ 0.93
FOXC2Q99958 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXC2Q99958 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXC2Q99958 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
FOXC2Q99958 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.87■□□□□ 0.93
FOXC2Q99958 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
FOXC2Q99958 AP004833.2-201ENST00000532228 1454 ntBASIC20.87■□□□□ 0.93
FOXC2Q99958 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.86■□□□□ 0.93
FOXC2Q99958 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.86■□□□□ 0.93
FOXC2Q99958 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
FOXC2Q99958 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC20.85■□□□□ 0.93
FOXC2Q99958 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
FOXC2Q99958 KRT125P-201ENST00000546827 989 ntBASIC20.85■□□□□ 0.93
FOXC2Q99958 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXC2Q99958 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.85■□□□□ 0.93
FOXC2Q99958 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.84■□□□□ 0.93
FOXC2Q99958 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXC2Q99958 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXC2Q99958 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXC2Q99958 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.83■□□□□ 0.93
FOXC2Q99958 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
FOXC2Q99958 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.83■□□□□ 0.93
FOXC2Q99958 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXC2Q99958 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXC2Q99958 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
FOXC2Q99958 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXC2Q99958 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.82■□□□□ 0.92
FOXC2Q99958 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXC2Q99958 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC20.82■□□□□ 0.92
FOXC2Q99958 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.81■□□□□ 0.92
FOXC2Q99958 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXC2Q99958 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.81■□□□□ 0.92
FOXC2Q99958 LONRF2P2-201ENST00000439212 571 ntBASIC20.81■□□□□ 0.92
FOXC2Q99958 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.81■□□□□ 0.92
FOXC2Q99958 AC087393.1-201ENST00000582896 145 ntBASIC20.81■□□□□ 0.92
FOXC2Q99958 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXC2Q99958 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
FOXC2Q99958 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXC2Q99958 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXC2Q99958 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.8■□□□□ 0.92
FOXC2Q99958 AL139246.5-201ENST00000606645 996 ntBASIC20.8■□□□□ 0.92
FOXC2Q99958 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
FOXC2Q99958 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXC2Q99958 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXC2Q99958 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.79■□□□□ 0.92
FOXC2Q99958 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXC2Q99958 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.79■□□□□ 0.92
FOXC2Q99958 MIR4787-201ENST00000607364 84 ntBASIC20.79■□□□□ 0.92
FOXC2Q99958 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.79■□□□□ 0.92
FOXC2Q99958 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXC2Q99958 BX664725.1-201ENST00000438252 379 ntBASIC20.78■□□□□ 0.92
FOXC2Q99958 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXC2Q99958 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
FOXC2Q99958 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXC2Q99958 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
FOXC2Q99958 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
FOXC2Q99958 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
FOXC2Q99958 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.77■□□□□ 0.91
FOXC2Q99958 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
FOXC2Q99958 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXC2Q99958 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
FOXC2Q99958 KRT16P3-201ENST00000439127 1283 ntBASIC20.76■□□□□ 0.91
FOXC2Q99958 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.76■□□□□ 0.91
FOXC2Q99958 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.76■□□□□ 0.91
FOXC2Q99958 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXC2Q99958 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXC2Q99958 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXC2Q99958 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
FOXC2Q99958 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
FOXC2Q99958 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
FOXC2Q99958 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXC2Q99958 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXC2Q99958 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXC2Q99958 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
FOXC2Q99958 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
FOXC2Q99958 UNC93B8-201ENST00000511903 705 ntBASIC20.74■□□□□ 0.91
FOXC2Q99958 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.74■□□□□ 0.91
FOXC2Q99958 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.74■□□□□ 0.91
FOXC2Q99958 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXC2Q99958 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXC2Q99958 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms