Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTX4Q96A99 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PTX4Q96A99 AP006261.1-201ENST00000584783 668 ntBASIC20.93■□□□□ 0.94
PTX4Q96A99 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.93■□□□□ 0.94
PTX4Q96A99 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTX4Q96A99 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTX4Q96A99 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.92■□□□□ 0.94
PTX4Q96A99 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTX4Q96A99 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTX4Q96A99 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
PTX4Q96A99 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTX4Q96A99 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTX4Q96A99 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.92■□□□□ 0.94
PTX4Q96A99 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PTX4Q96A99 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTX4Q96A99 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTX4Q96A99 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTX4Q96A99 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTX4Q96A99 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PTX4Q96A99 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.89■□□□□ 0.94
PTX4Q96A99 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTX4Q96A99 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.89■□□□□ 0.93
PTX4Q96A99 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTX4Q96A99 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.88■□□□□ 0.93
PTX4Q96A99 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTX4Q96A99 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PTX4Q96A99 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.88■□□□□ 0.93
PTX4Q96A99 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.88■□□□□ 0.93
PTX4Q96A99 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTX4Q96A99 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTX4Q96A99 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PTX4Q96A99 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTX4Q96A99 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTX4Q96A99 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PTX4Q96A99 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PTX4Q96A99 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTX4Q96A99 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.85■□□□□ 0.93
PTX4Q96A99 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.85■□□□□ 0.93
PTX4Q96A99 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.84■□□□□ 0.93
PTX4Q96A99 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTX4Q96A99 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.84■□□□□ 0.93
PTX4Q96A99 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.84■□□□□ 0.93
PTX4Q96A99 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.83■□□□□ 0.93
PTX4Q96A99 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTX4Q96A99 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.83■□□□□ 0.93
PTX4Q96A99 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
PTX4Q96A99 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
PTX4Q96A99 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTX4Q96A99 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTX4Q96A99 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTX4Q96A99 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTX4Q96A99 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTX4Q96A99 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.82■□□□□ 0.92
PTX4Q96A99 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.82■□□□□ 0.92
PTX4Q96A99 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTX4Q96A99 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.81■□□□□ 0.92
PTX4Q96A99 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC20.81■□□□□ 0.92
PTX4Q96A99 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.81■□□□□ 0.92
PTX4Q96A99 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTX4Q96A99 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTX4Q96A99 AC022211.4-201ENST00000625094 2161 ntBASIC20.8■□□□□ 0.92
PTX4Q96A99 AC087741.3-201ENST00000624270 1347 ntBASIC20.8■□□□□ 0.92
PTX4Q96A99 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.8■□□□□ 0.92
PTX4Q96A99 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTX4Q96A99 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.8■□□□□ 0.92
PTX4Q96A99 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PTX4Q96A99 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PTX4Q96A99 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTX4Q96A99 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
PTX4Q96A99 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.79■□□□□ 0.92
PTX4Q96A99 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTX4Q96A99 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTX4Q96A99 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTX4Q96A99 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.78■□□□□ 0.92
PTX4Q96A99 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTX4Q96A99 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTX4Q96A99 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTX4Q96A99 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.78■□□□□ 0.92
PTX4Q96A99 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTX4Q96A99 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PTX4Q96A99 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.78■□□□□ 0.92
PTX4Q96A99 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.78■□□□□ 0.92
PTX4Q96A99 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTX4Q96A99 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTX4Q96A99 AL139125.2-201ENST00000623134 1869 ntBASIC20.77■□□□□ 0.92
PTX4Q96A99 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTX4Q96A99 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
PTX4Q96A99 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PTX4Q96A99 AC138932.3-201ENST00000567634 1902 ntBASIC20.76■□□□□ 0.91
PTX4Q96A99 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTX4Q96A99 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTX4Q96A99 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms