Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD3Q7Z407 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD3Q7Z407 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.43■□□□□ 0.38
CSMD3Q7Z407 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD3Q7Z407 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD3Q7Z407 MIR3960-201ENST00000583311 91 ntBASIC17.42■□□□□ 0.38
CSMD3Q7Z407 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CSMD3Q7Z407 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.42■□□□□ 0.38
CSMD3Q7Z407 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSMD3Q7Z407 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSMD3Q7Z407 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSMD3Q7Z407 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSMD3Q7Z407 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC17.4■□□□□ 0.38
CSMD3Q7Z407 ABCB10P3-201ENST00000561950 2166 ntBASIC17.39■□□□□ 0.37
CSMD3Q7Z407 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CSMD3Q7Z407 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CSMD3Q7Z407 RNF146-205ENST00000477776 762 ntTSL 3 BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSMD3Q7Z407 TK2-216ENST00000564917 1156 ntTSL 3 BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSMD3Q7Z407 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CSMD3Q7Z407 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.35■□□□□ 0.37
CSMD3Q7Z407 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CSMD3Q7Z407 AC019171.1-201ENST00000601251 1056 ntBASIC17.35■□□□□ 0.37
CSMD3Q7Z407 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSMD3Q7Z407 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CSMD3Q7Z407 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC17.35■□□□□ 0.37
CSMD3Q7Z407 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 MTX2-204ENST00000443241 799 ntTSL 3 BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC17.34■□□□□ 0.37
CSMD3Q7Z407 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CSMD3Q7Z407 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CSMD3Q7Z407 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CSMD3Q7Z407 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CSMD3Q7Z407 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CSMD3Q7Z407 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CSMD3Q7Z407 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC17.32■□□□□ 0.36
CSMD3Q7Z407 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSMD3Q7Z407 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CSMD3Q7Z407 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC17.32■□□□□ 0.36
CSMD3Q7Z407 AC018755.3-202ENST00000596210 929 ntBASIC17.32■□□□□ 0.36
CSMD3Q7Z407 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 UNC93B8-201ENST00000511903 705 ntBASIC17.31■□□□□ 0.36
CSMD3Q7Z407 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CSMD3Q7Z407 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 AC087393.1-201ENST00000582896 145 ntBASIC17.3■□□□□ 0.36
CSMD3Q7Z407 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CSMD3Q7Z407 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 MIR4787-201ENST00000607364 84 ntBASIC17.29■□□□□ 0.36
CSMD3Q7Z407 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CSMD3Q7Z407 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CSMD3Q7Z407 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC17.28■□□□□ 0.36
CSMD3Q7Z407 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms