Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.42■■■□□ 2.14
SMCHD1A6NHR9 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SMCHD1A6NHR9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.41■■■□□ 2.14
SMCHD1A6NHR9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.4■■■□□ 2.14
SMCHD1A6NHR9 AL449106.1-201ENST00000608517 1980 ntBASIC28.39■■■□□ 2.13
SMCHD1A6NHR9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.13
SMCHD1A6NHR9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SMCHD1A6NHR9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 DUX4L9-201ENST00000449051 1259 ntBASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
SMCHD1A6NHR9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SMCHD1A6NHR9 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SMCHD1A6NHR9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
SMCHD1A6NHR9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.37■■■□□ 2.13
SMCHD1A6NHR9 AC026202.3-201ENST00000600805 1127 ntBASIC28.37■■■□□ 2.13
SMCHD1A6NHR9 AL451085.2-201ENST00000605085 799 ntBASIC28.37■■■□□ 2.13
SMCHD1A6NHR9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
SMCHD1A6NHR9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC28.36■■■□□ 2.13
SMCHD1A6NHR9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
SMCHD1A6NHR9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
SMCHD1A6NHR9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
SMCHD1A6NHR9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.35■■■□□ 2.13
SMCHD1A6NHR9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SMCHD1A6NHR9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.34■■■□□ 2.13
SMCHD1A6NHR9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SMCHD1A6NHR9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
SMCHD1A6NHR9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
SMCHD1A6NHR9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SMCHD1A6NHR9 DUX4L18-201ENST00000553347 1267 ntBASIC28.32■■■□□ 2.12
SMCHD1A6NHR9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.31■■■□□ 2.12
SMCHD1A6NHR9 RP9P-202ENST00000450133 1212 ntBASIC28.31■■■□□ 2.12
SMCHD1A6NHR9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC28.31■■■□□ 2.12
SMCHD1A6NHR9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SMCHD1A6NHR9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.31■■■□□ 2.12
SMCHD1A6NHR9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SMCHD1A6NHR9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SMCHD1A6NHR9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.29■■■□□ 2.12
SMCHD1A6NHR9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SMCHD1A6NHR9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
SMCHD1A6NHR9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SMCHD1A6NHR9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SMCHD1A6NHR9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC28.28■■■□□ 2.12
SMCHD1A6NHR9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.28■■■□□ 2.12
SMCHD1A6NHR9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC28.27■■■□□ 2.12
SMCHD1A6NHR9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SMCHD1A6NHR9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SMCHD1A6NHR9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SMCHD1A6NHR9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
SMCHD1A6NHR9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SMCHD1A6NHR9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SMCHD1A6NHR9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
SMCHD1A6NHR9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.26■■■□□ 2.11
SMCHD1A6NHR9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.26■■■□□ 2.11
SMCHD1A6NHR9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC28.25■■■□□ 2.11
SMCHD1A6NHR9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SMCHD1A6NHR9 MIR3960-201ENST00000583311 91 ntBASIC28.24■■■□□ 2.11
SMCHD1A6NHR9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SMCHD1A6NHR9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SMCHD1A6NHR9 BX255925.1-201ENST00000566954 1854 ntBASIC28.23■■■□□ 2.11
SMCHD1A6NHR9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SMCHD1A6NHR9 AL035685.1-201ENST00000636663 812 ntBASIC28.23■■■□□ 2.11
SMCHD1A6NHR9 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SMCHD1A6NHR9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SMCHD1A6NHR9 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
SMCHD1A6NHR9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SMCHD1A6NHR9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
SMCHD1A6NHR9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms